View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20531_low_2 (Length: 476)

Name: NF20531_low_2
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20531_low_2
NF20531_low_2
[»] chr3 (8 HSPs)
chr3 (11-416)||(11231524-11231928)
chr3 (206-323)||(31197330-31197447)
chr3 (206-321)||(31192621-31192736)
chr3 (206-321)||(52775577-52775692)
chr3 (206-323)||(52770869-52770986)
chr3 (81-131)||(11243664-11243714)
chr3 (417-460)||(11232305-11232348)
chr3 (40-81)||(11243595-11243635)
[»] scaffold0014 (2 HSPs)
scaffold0014 (206-323)||(97974-98091)
scaffold0014 (206-322)||(93337-93453)
[»] chr8 (1 HSPs)
chr8 (321-460)||(17514048-17514182)
[»] chr7 (2 HSPs)
chr7 (206-323)||(16254356-16254473)
chr7 (206-321)||(16259066-16259181)
[»] chr4 (3 HSPs)
chr4 (206-323)||(13985826-13985943)
chr4 (206-322)||(13990464-13990580)
chr4 (322-376)||(18983443-18983497)
[»] scaffold0013 (2 HSPs)
scaffold0013 (206-322)||(244968-245084)
scaffold0013 (251-323)||(251091-251163)
[»] chr6 (5 HSPs)
chr6 (206-323)||(26129076-26129193)
chr6 (321-403)||(1092000-1092082)
chr6 (215-319)||(29155892-29155996)
chr6 (206-321)||(26135990-26136106)
chr6 (321-349)||(34246669-34246697)
[»] chr5 (6 HSPs)
chr5 (321-403)||(16748222-16748305)
chr5 (213-319)||(30682527-30682633)
chr5 (324-416)||(29735700-29735793)
chr5 (213-319)||(30054701-30054807)
chr5 (328-447)||(37344214-37344329)
chr5 (270-318)||(30430880-30430928)
[»] chr1 (1 HSPs)
chr1 (224-316)||(13426843-13426935)
[»] scaffold0321 (1 HSPs)
scaffold0321 (321-374)||(1933-1986)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 11231524 - 11231928
Alignment:
Q  11 cacagaaatggataactcgttgcgatatgagaatgtggaagtgtttggaattgaattgcatggattctgaatacaaaaattgagtttcattatcttctca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231524 cacagaaatggataactcgttgcgatatgagaatgtggaagtgtttg-aattgaattgcatggattctgaatacaaaaattgagtttcattatcttctca 11231622  T
Q  111 ttattgattaataatttaacatagttttagaattgtgaaagtaaattttggtgtgagtcttgttttgctcaatttgataatcattgcatgaaaattaacc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231623 ttattgattaataatttaacatagttttagaattgtgaaagtaaattttggtgtgagtcttgttttgctcaatttgataatcattgcatgaaaattaacc 11231722  T
Q  211 gttttcatatcaattcaatgaatctagaattttctctcgatttctctctttcttccttgttaagcttctgcatttcttctactttcaccatggatatggt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231723 gttttcatatcaattcaatgaatctagaattttctctcgatttctctctttcttccttgttaagcttctgcatttcttctactttcaccatggatatggt 11231822  T
Q  311 gaagtttaacatgcttcttgacctgcaaattcaagagctgaaaattttgattccattattaaatttgactatgcatagtttgcttatttatttccaagag 410  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231823 gaagtttaacatgcttcttgacctgcaaattcaagagctgagaattttgattccattattaaatttgactatgcatagtttgcttatttatttccaagag 11231922  T
Q  411 atatca 416  Q
    ||||||    
T  11231923 atatca 11231928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 31197447 - 31197330
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  31197447 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 31197349  T
Q  305 tatggtgaagtttaacatg 323  Q
    |||||||||||||||||||    
T  31197348 tatggtgaagtttaacatg 31197330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 206 - 321
Target Start/End: Complemental strand, 31192736 - 31192621
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  31192736 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 31192638  T
Q  305 tatggtgaagtttaaca 321  Q
    |||||||||||||||||    
T  31192637 tatggtgaagtttaaca 31192621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 52775577 - 52775692
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  52775577 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 52775675  T
Q  305 tatggtgaagtttaaca 321  Q
    |||||||||||||||||    
T  52775676 tatggtgaagtttaaca 52775692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 52770869 - 52770986
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | | ||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  52770869 taaccgttttcttctaaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 52770967  T
Q  305 tatggtgaagtttaacatg 323  Q
    |||||||||||||||||||    
T  52770968 tatggtgaagtttaacatg 52770986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11243664 - 11243714
Alignment:
Q  81 atacaaaaattgagtttcattatcttctcattattgattaataatttaaca 131  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11243664 atacaaaaagtgagtttcattatcttctcattattgattaataatttaaca 11243714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 11232305 - 11232348
Alignment:
Q  417 atcacatcatcatgagataaataagtacttcacaacgaaaccta 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11232305 atcacatcatcatgagataaataagtacttcacaacgaaaccta 11232348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 11243595 - 11243635
Alignment:
Q  40 agaatgtggaagtgtttggaattgaattgcatggattctgaa 81  Q
    |||||||||||||||||| |||||||||| ||||||||||||    
T  11243595 agaatgtggaagtgtttg-aattgaattgtatggattctgaa 11243635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 98091 - 97974
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  98091 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 97993  T
Q  305 tatggtgaagtttaacatg 323  Q
    |||||||||||||||||||    
T  97992 tatggtgaagtttaacatg 97974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 93453 - 93337
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  93453 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 93355  T
Q  305 tatggtgaagtttaacat 322  Q
    ||||||||||||||||||    
T  93354 tatggtgaagtttaacat 93337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 321 - 460
Target Start/End: Complemental strand, 17514182 - 17514048
Alignment:
Q  321 atgcttcttgacctgcaaattcaagagctgaaaattttgattccattattaaatttgactatgcatagtttgcttatttatttccaagagatatcaatca 420  Q
    ||||||||||||||||||||| || |||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||     |||    
T  17514182 atgcttcttgacctgcaaatttaatagctaacaattttgattccatt-ttaaatttgactatgcataatttgcttatttatttcgaagagat----gtca 17514088  T
Q  421 catcatcatgagataaataagtacttcacaacgaaaccta 460  Q
    ||||||||||| |||||||||||||| |||| | ||||||    
T  17514087 catcatcatgaaataaataagtactttacaatggaaccta 17514048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 16254356 - 16254473
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcga-tttctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||  | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  16254356 taaccgttttcttctcaattcaatgaatctag-cttttatctaaattttctctctttcttctttgttaagcttctgcatttcttcaactttcaccatgga 16254454  T
Q  305 tatggtgaagtttaacatg 323  Q
    |||||||||||||||||||    
T  16254455 tatggtgaagtttaacatg 16254473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 16259066 - 16259181
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  16259066 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttcttcatttcttcaactttcaccatgga 16259164  T
Q  305 tatggtgaagtttaaca 321  Q
    |||||||||||||||||    
T  16259165 tatggtgaagtttaaca 16259181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 13985826 - 13985943
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  13985826 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 13985924  T
Q  305 tatggtgaagtttaacatg 323  Q
    |||||||||||||||||||    
T  13985925 tatggtgaagtttaacatg 13985943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 13990464 - 13990580
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  13990464 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 13990562  T
Q  305 tatggtgaagtttaacat 322  Q
    ||||||||||||||||||    
T  13990563 tatggtgaagtttaacat 13990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 18983443 - 18983497
Alignment:
Q  322 tgcttcttgacctgcaaattcaagagctgaaaattttgattccattattaaattt 376  Q
    |||||| ||| ||||||||||||||||||||| |||||||| ||||| |||||||    
T  18983443 tgcttcatgatctgcaaattcaagagctgaaacttttgatttcattagtaaattt 18983497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 245084 - 244968
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  245084 taaccgttttcttctcaattcaatgaatctagc-ttttatctcaattttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatgga 244986  T
Q  305 tatggtgaagtttaacat 322  Q
    ||||||||||||||||||    
T  244985 tatggtgaagtttaacat 244968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 251163 - 251091
Alignment:
Q  251 tttctctctttcttccttgttaagcttctgcatttcttctactttcaccatggatatggtgaagtttaacatg 323  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  251163 tttctctctttcttctttgttaagcttctgcatttcttcaacttccaccatggatatggtgaagtttaacatg 251091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 26129076 - 26129193
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgga 304  Q
    ||||||||||| | ||||||| ||||||||||  |||| |||| |||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  26129076 taaccgttttcttctcaattctatgaatctagc-ttttatctcaattttctctccttcttctttgttaagcttctgcatttcttcaactttcaccatgga 26129174  T
Q  305 tatggtgaagtttaacatg 323  Q
    |||||||||||||||||||    
T  26129175 tatggtgaagtttaacatg 26129193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 1092000 - 1092082
Alignment:
Q  321 atgcttcttgacctgcaaattcaagagctgaaaattttgattccattattaaatttgactatgcatagtttgcttatttattt 403  Q
    ||||||||||||||||||||||||  | ||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1092000 atgcttcttgacctgcaaattcaaagggtgagaattttgattccattagtaaatttgactatgcatagttcgcttatttattt 1092082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 29155996 - 29155892
Alignment:
Q  215 tcatatcaattcaatgaatctagaattttctctcgatttctctctttcttccttgttaagcttctgcatttct-tctactttcaccatggatatggtgaa 313  Q
    |||| ||||||||||||||||||| ||||||||   ||||||||||||||| |  ||||| |||||||||| | |||| || ||||||||||| ||||||    
T  29155996 tcatttcaattcaatgaatctaga-ttttctctatctttctctctttcttcttccttaagtttctgcatttttctctaattccaccatggatacggtgaa 29155898  T
Q  314 gtttaa 319  Q
    ||||||    
T  29155897 gtttaa 29155892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 26135990 - 26136106
Alignment:
Q  206 taaccgttttcatatcaattcaatgaatctagaattttctctcgattt-ctctctttcttccttgttaagcttctgcatttcttctactttcaccatgg- 303  Q
    ||||||||||| | ||||||| ||||||||||  |||| |||| |||| |||||||||||| ||| ||||||||||||||||||| || ||||||||||     
T  26135990 taaccgttttcttctcaattctatgaatctagc-ttttatctcaattttctctctttcttctttggtaagcttctgcatttcttc-ac-ttcaccatgga 26136086  T
Q  304 --atatggtgaagtttaaca 321  Q
      ||| ||||||||||||||    
T  26136087 aaatagggtgaagtttaaca 26136106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 349
Target Start/End: Complemental strand, 34246697 - 34246669
Alignment:
Q  321 atgcttcttgacctgcaaattcaagagct 349  Q
    |||||||||||||||||||||||||||||    
T  34246697 atgcttcttgacctgcaaattcaagagct 34246669  T

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Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 16748305 - 16748222
Alignment:
Q  321 atgcttcttgacctgcaaattcaagagctgaaaattttgattccattattaaatttgactatgcatagtttgc-ttatttattt 403  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  16748305 atgcttcttgacctgcaaattcaagagctgagaattttgattccattagtaaatttgactatgcatactttgctttatttattt 16748222  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 30682527 - 30682633
Alignment:
Q  213 tttcatatcaattcaatgaatctagaattttctctcgatttctctctttcttccttgttaagcttctgcatttcttctactttcaccatggatatggtga 312  Q
    ||||| |||||||||||||||||||||||||||||   ||||||||||||||| |  || | |||||||||||  |||  || |||||||||||||||||    
T  30682527 tttcagatcaattcaatgaatctagaattttctctaattttctctctttcttcttcattgaacttctgcattttctctgattccaccatggatatggtga 30682626  T
Q  313 agtttaa 319  Q
    |||||||    
T  30682627 agtttaa 30682633  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 416
Target Start/End: Original strand, 29735700 - 29735793
Alignment:
Q  324 cttcttgacctgcaaattcaagagctgaaaattttgattccattattaaatttgactatgcatagtttgctt-atttatttccaagagatatca 416  Q
    |||||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||   || ||| ||| |||||||||||||||||||||    
T  29735700 cttcttgatctgcaaattcaagagcataaaattttgattccattagtaaatttgactatatgtattttacttaatttatttccaagagatatca 29735793  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 30054807 - 30054701
Alignment:
Q  213 tttcatatcaattcaatgaatctagaattttctctcgatttctctctttcttccttgttaagcttctgcatttcttctactttcaccatggatatggtga 312  Q
    ||||| ||||||||||||||||||||||||  |||   ||||||||||||||  | ||| |||||||||||||  |||  || |||||||||||||||||    
T  30054807 tttcagatcaattcaatgaatctagaatttgatctaattttctctctttctttttcgttgagcttctgcattttctctgattccaccatggatatggtga 30054708  T
Q  313 agtttaa 319  Q
    |||||||    
T  30054707 agtttaa 30054701  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 447
Target Start/End: Original strand, 37344214 - 37344329
Alignment:
Q  328 ttgacctgcaaattcaagagctgaaaattttgattccattattaaatttgactatgcatagtttgc-ttatttatttccaagagatatcaatcacatcat 426  Q
    ||||||| ||||||||||||||   |||||||||| ||||| ||||| ||||||  |||| ||||| |||||||||||||||| ||    ||||||||||    
T  37344214 ttgaccttcaaattcaagagctatgaattttgatttcattagtaaatatgactacacata-tttgctttatttatttccaagaaat----atcacatcat 37344308  T
Q  427 catgagataaataagtacttc 447  Q
    | ||| |||||||||| ||||    
T  37344309 cgtgaaataaataagtgcttc 37344329  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 30430928 - 30430880
Alignment:
Q  270 ttaagcttctgcatttcttctactttcaccatggatatggtgaagttta 318  Q
    ||||||||||||||||  |||  || |||||||||||||||||||||||    
T  30430928 ttaagcttctgcattttctctgattccaccatggatatggtgaagttta 30430880  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 13426935 - 13426843
Alignment:
Q  224 ttcaatgaatctagaattttctctcgatttctctctttcttccttgttaagcttctgcatttcttctactttcaccatggatatggtgaagtt 316  Q
    |||||||||||||||||||||||    ||||||||||||||| |   |||| |||| |||||  |||  || |||||||||||||||||||||    
T  13426935 ttcaatgaatctagaattttctccaattttctctctttcttcttccctaagtttcttcattttctctgattccaccatggatatggtgaagtt 13426843  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 1986 - 1933
Alignment:
Q  321 atgcttcttgacctgcaaattcaagagctgaaaattttgattccattattaaat 374  Q
    |||||||||||||||||||||||||||||   | |||||||| ||||| |||||    
T  1986 atgcttcttgacctgcaaattcaagagctatgatttttgatttcattagtaaat 1933  T

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