View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20531_low_5 (Length: 383)
Name: NF20531_low_5
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 354
Target Start/End: Complemental strand, 49415330 - 49414973
Alignment:
| Q |
2 |
ccccttgtatcttggatttgattgaaatgcaatgtgtttattatttcctnnnnnnncaattagcacatgattacgtgagtctt---ataattgttcaaaa |
98 |
Q |
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| T |
49415330 |
ccccttgtatcttggatttgattgaaatgcaatgtgtttattatttcctaaaaaaacaattagcacatgattacgtgagtcttcttataattgttcaaaa |
49415231 |
T |
|
| Q |
99 |
ccctcatgacataattatgaggtaatgctgatgcaaaattgcgcacaatcacctgtgannnnnnnn--agaggacaatcacctgtgattaatagataaac |
196 |
Q |
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| T |
49415230 |
ccctcatgacataattatgaggtaatgctgatgcaaaattgcgcacaatcacctgtgattttttttttagaggacaatcacctgtgattaatagataaac |
49415131 |
T |
|
| Q |
197 |
gtgcgacgaccacacatgctaccatatcttgttattgtcaaatgtgttagtcagttggttgcactgtattgctagacgagctatcatttcataggattat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49415130 |
gtgcgacgaccacacatgctaccatatcttgttattgtcaaatgtgttagtcagttggttgcactgtattgctagacgagctatcatttcataggattat |
49415031 |
T |
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| Q |
297 |
tttaaacaatttttgaaaacaaattgatattgatatctttaatttttacagtattata |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49415030 |
tttaaacaatttttgaaaacaaattgatattgatatctttaatttttacagtattata |
49414973 |
T |
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