View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20531_low_7 (Length: 363)
Name: NF20531_low_7
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 6971287 - 6971630
Alignment:
| Q |
1 |
agacttgtagagagagttgtgtggaggataaatttatttactaacgccctatagatacaattatatattaatatttggtgggtgatcagtaaaaatctct |
100 |
Q |
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| T |
6971287 |
agacttgtagagagagttgtgtggaggataaatttatttactaacgccctatagatacaattatatattaatatttggtgggtgattagtaaaaacctct |
6971386 |
T |
|
| Q |
101 |
ataaacagtctttaaatcttgaggtcagctctaattttgacgagccctgaaaatccaactcacctaaactttatattagaatgatgttttttatattagt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6971387 |
ataaacagtctttaaatcttgaggtcagctctgattttgatgagtcctgaaaatccaactcacctaaactttatattagaatgatattttttatattagt |
6971486 |
T |
|
| Q |
201 |
gcttataaatatggccccatagagagggagagagattgtgtgcatgtattaaataatgatttcaaattatattattattaatgggattttgcaggaaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971487 |
gcttataaatatggccccatagagagggagagagattgtgtgcatgtattaaataatgatttcaaattatattattattaatgggattttgcaggaaaga |
6971586 |
T |
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| Q |
301 |
gattcatatattggaatggaatagagccaaggatgtgcctcaca |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971587 |
gattcatatattggaatggaatagagccaaggatgtgcctcaca |
6971630 |
T |
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