View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20532_high_4 (Length: 341)
Name: NF20532_high_4
Description: NF20532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20532_high_4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 16216913 - 16216734
Alignment:
| Q |
162 |
tcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaat |
261 |
Q |
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| T |
16216913 |
tcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaat |
16216814 |
T |
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| Q |
262 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaa |
341 |
Q |
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| T |
16216813 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaa |
16216734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 16964169 - 16963990
Alignment:
| Q |
162 |
tcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaat |
261 |
Q |
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| T |
16964169 |
tcagaaaatatgaagaatttctttgtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaat |
16964070 |
T |
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| Q |
262 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaa |
341 |
Q |
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| T |
16964069 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaa |
16963990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 16217055 - 16216920
Alignment:
| Q |
1 |
cttatggacccaaaaaatcaaatttgtcgtttctataaatgcatattaatttgaatacatttatttttcttcaactgtgcaatatatagtgtaccttggc |
100 |
Q |
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| T |
16217055 |
cttatggacccaaaaaatcaaatttctcgtttctataaatgcatattaatttgaatgcatttatttttcttcaactgtgcaatatatagtgtaccttggc |
16216956 |
T |
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| Q |
101 |
c-ttttgtgactcactcaccattcttaatttctctc |
135 |
Q |
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| T |
16216955 |
ctttttgtgactcactcaccattcttaatttctctc |
16216920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16964290 - 16964227
Alignment:
| Q |
1 |
cttatggacccaaaaaatcaaatttgtcgtttctataaatgcatattaatttgaatacatttat |
64 |
Q |
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| T |
16964290 |
cttatggacccaaaaaatcatatttgtcgtttctttaaatgcacattaatttgaatgcatttat |
16964227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 16964229 - 16964176
Alignment:
| Q |
83 |
tatatagtgtaccttggcctttt-gtgactcactcaccattcttaatttctctc |
135 |
Q |
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| T |
16964229 |
tatatagtgtaccttagcctttttgaaactcactcaccattcttaatttctctc |
16964176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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