View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20532_high_6 (Length: 250)
Name: NF20532_high_6
Description: NF20532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20532_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16217046 - 16217285
Alignment:
| Q |
1 |
ggtccataagcaacagatttataagggttgatctataactgtatactttggaccgttgttagggaacaatttatttaaagataatacacactaaagtttg |
100 |
Q |
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| T |
16217046 |
ggtccataagcaacagatttataagggctgatctataactgtata-tttggaccgttgttagggaacaatttatttgaagataatacacactaaagtttg |
16217144 |
T |
|
| Q |
101 |
gttggaccttggacatgtggactttttaagaaatgactcttggctaagattcaatttctttctgctataagtagtataaacaacaaaaaattatcaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16217145 |
gttggaccttggacatgtggactttttaagaaatgactcttggctaagattcaatttctttctgctataagtagtataaacaacagaaaattatcaattt |
16217244 |
T |
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| Q |
201 |
atttaattataaaattaaaacttctcagtaaatagtattat |
241 |
Q |
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| T |
16217245 |
atttaattatataattaaaacttctcaataaatagtattat |
16217285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 16964281 - 16964489
Alignment:
| Q |
1 |
ggtccataagcaacagatttataagggttgatctataactgtatactttggaccgttgttagggaacaatttatttaaagataatacacac-taaagttt |
99 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |||||||| |
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| T |
16964281 |
ggtccataagcaacagattttaaaggactgatctataactgtatactttggaccgttgttagggaacaacttatttgaagataatatgtacataaagttt |
16964380 |
T |
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| Q |
100 |
ggttggaccttggacatgtggactttttaagaaatgactcttggctaagattcaatttctttctgctataagtagtataaacaacaaaaaattatcaatt |
199 |
Q |
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||||| | |||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||| ||||| ||| |
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| T |
16964381 |
ggttgaatcttggacaggtggactacttaagaaatgacttttggctaagattcaatttcttt---ctatttttagtgtaaacaacaaaaagttatcgatt |
16964477 |
T |
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| Q |
200 |
tatttaattata |
211 |
Q |
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| T |
16964478 |
tatttaattata |
16964489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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