View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20532_low_1 (Length: 435)
Name: NF20532_low_1
Description: NF20532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20532_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 40483313 - 40483725
Alignment:
| Q |
17 |
acaaacatcacactaacagatacaaaagaaaatcttttgtggacaatccatcacaaaagactccctcatatataacatatatattaatgcgtacacgacc |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483313 |
acaaacatcacactaacagatacaaaaaaaaatcttttgttgacaatccatcacaaaagactccctcatatataacatatatattaatgcgtacacgacc |
40483412 |
T |
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| Q |
117 |
ataggaaaacgatagtagcaaaacgacaactgtgattttacaaaatatatattagaacttggaaagtattcattacgtatcatctgataaaataccacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40483413 |
ataggaaaacgatagtagcaaaacgacaactgtgatcttacaaaatatatattagaacttggaaagtattcattacgtatcatctgataaaatacc-caa |
40483511 |
T |
|
| Q |
217 |
ggcaacaaaaattgttatatttcgtagaaggagctcaaacttaaaattgatatgattatttaataggtaaggctatgaaatgcaatgtcatcacccccaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483512 |
ggcaacaaaaattgttatatttcgtagaaggagctcaaacttaaaattgatatgattatttaataggtaaggctatgaaatgcaatgtcatcacccccaa |
40483611 |
T |
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| Q |
317 |
gataatctaaattgaaactgcatacataggggcatatcaggaagtgggtgaataaaaaattaaccatctgttttttagagaacaattaaccatctttgtt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483612 |
gataatctaaattgaaactgcatacataggggcatataaggaagtgggtgaataaaaaattaaccatctgttttttagagaacaattaaccatctttgtt |
40483711 |
T |
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| Q |
417 |
gtgtctgtgctgct |
430 |
Q |
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| T |
40483712 |
gtgcctgtgttgct |
40483725 |
T |
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