View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20532_low_2 (Length: 377)
Name: NF20532_low_2
Description: NF20532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20532_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 28079277 - 28079618
Alignment:
| Q |
21 |
ttcaactaaacattcataaaacttttggttaaacaactaccttacttaaaataattcttaaccttaagctgaaaacagtgtaaaagtgattnnnnnnntc |
120 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28079277 |
ttcaactaaacatccataaaacttttggttaaacaactaccttacttaaaataattcttaaccttaagctgaaaacagtgtaaaagtgattaaaaaaatc |
28079376 |
T |
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| Q |
121 |
caaagctttactataaacagaaaaaataaatcagtttcatatccagcatttgccaaaactttcaaaagacagaaagctgaaacacaaaactaaaggagag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28079377 |
caaagctttactataaacagaaaaaataaatcagtttcatatccagcatttgccaaaactttcaaaagacagaaagctgaaacacaaaactaaaggagag |
28079476 |
T |
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| Q |
221 |
ag-nnnnnnnncatagttacacttgtttttgacataccaaaatcaaacactggatattcttcagagtacaaagatcatgacatgtcacacacttcagcaa |
319 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28079477 |
agaaaaaaaaacatagttacacttgtttttgacataccaaaatcaaacactggatattcttcagagtacaaagatcatgacatgtcacacacttcagcaa |
28079576 |
T |
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| Q |
320 |
gtgtcaagatatactttaagctccttccacaacttaactagt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
28079577 |
gtgtcaagatatactttaagctccttccacaacttaactagt |
28079618 |
T |
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