View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20533_high_2 (Length: 377)

Name: NF20533_high_2
Description: NF20533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20533_high_2
NF20533_high_2
[»] chr1 (2 HSPs)
chr1 (18-114)||(11399038-11399134)
chr1 (18-85)||(36612695-36612762)
[»] chr4 (1 HSPs)
chr4 (43-85)||(43695224-43695266)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 11399134 - 11399038
Alignment:
Q  18 ctaaccaacttccaaaacagttgctaacaaatctaactgttttaactaacttgaattaaaatacaacagtttttgatggtgagaagcgttgcatcca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  11399134 ctaaccaacttccaaaacagttgctaacaaatctaactgttttaactaacttgaattaaaatacaacagttttttatcgtgagaagctttgcatcca 11399038  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 36612762 - 36612695
Alignment:
Q  18 ctaaccaacttccaaaacagttgctaacaaatctaactgttttaactaacttgaattaaaatacaaca 85  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||||||||| |||||||||||||||    
T  36612762 ctaaccaacttctaaaacagttgacaacaaacctaactgttttaactaacttaaattaaaatacaaca 36612695  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 43695224 - 43695266
Alignment:
Q  43 aacaaatctaactgttttaactaacttgaattaaaatacaaca 85  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  43695224 aacaaacctaactgttttaactaacttgaattaaaatacaaca 43695266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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