View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20533_low_1 (Length: 484)
Name: NF20533_low_1
Description: NF20533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20533_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 21701397 - 21700924
Alignment:
| Q |
1 |
aaggtgatcctctaccccctcacctgtttattattggtgcagaaggtctatcagctcttattcgagatgcggaggagcgccaaattattataggtacctc |
100 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| ||||||||| |
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| T |
21701397 |
aaggtgatcctctatccccttacctgtttattattggtgcagaaggtctatcacctcttattcgagatgcagtggagcaacaaattattacaggtacctc |
21701298 |
T |
|
| Q |
101 |
tatttgtcgcggtgcaccttctatttctcatcttctatttgcagatgattgttttatgttttttaaagctgaagaaagtcaggctcatgctatgaaaaat |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21701297 |
tatttgtcgcggtgcaccttctgtttctcatcttctatttgcagatgattgttttctgttttttaaagctgaagaaagtcaggctcatgctatgaaaaat |
21701198 |
T |
|
| Q |
201 |
attctaacggtttatgaggcagtgtcaggccagcctattagtctcccaaaattagagatttactatagtcgtaatgtttcgtctgaattgaaaggtacaa |
300 |
Q |
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|||||||||||||||||||||||||| || || |||||||||| ||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
21701197 |
attctaacggtttatgaggcagtgtcgggacaagctattagtcttccaaaatcaaagatttactgtagtcgtaatgtttcatctgaattgaaaggtacaa |
21701098 |
T |
|
| Q |
301 |
tagctgacacaatgggtgtccagtctgtgttgggtactggtaaatatctggggttaccatcaatgatcgatagagataaaaagtcaacgtttggctacat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
21701097 |
tagctgacacaatgggtgtccagtctgtgttgggtactggtaaatatct-gggttaccatcaatgatcgatagagataaaaattcaacgtttggctaaat |
21700999 |
T |
|
| Q |
401 |
taaggaccaagtgtggaatcacatcaattcatggattagtaaatgtctttctaaggcaggtcaagaagtgatgat |
475 |
Q |
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| T |
21700998 |
taaggaccgcgtgtggaatcgcatcaattcatggattagtaaatgtctttctaaggcaggtcaagaagtgatgat |
21700924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 31158962 - 31159060
Alignment:
| Q |
124 |
tttctcatcttctatttgcagatgattgttttatgttttttaaagctgaagaaagtcaggctcatgctatgaaaaatattctaacggtttatgaggcag |
222 |
Q |
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||||||||||||||||||| || ||||||||| | ||||| ||||||||||| |||||||| |||| |||||| || ||| ||||| |||||||||| |
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| T |
31158962 |
tttctcatcttctatttgcggacgattgttttctttttttcaaagctgaagagagtcaggcccatgttatgaagtctactcttacggtgtatgaggcag |
31159060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 10982936 - 10982855
Alignment:
| Q |
122 |
tatttctcatcttctatttgcagatgattgttttatgttttttaaagctgaagaaagtcaggctcatgctatgaaaaatatt |
203 |
Q |
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| T |
10982936 |
tatttcgcatctgctctttgcagatgattgctttctattttttaaagcaacagaaggtcaggcccaagctatgaaaaatatt |
10982855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 10396085 - 10396026
Alignment:
| Q |
113 |
tgcaccttctatttctcatcttctatttgcagatgattgttttatgttttttaaagctga |
172 |
Q |
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||||||| |||||||||| || |||||||||||||| |||||| ||||||| | |||||| |
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| T |
10396085 |
tgcacctactatttctcacctcctatttgcagatgactgttttttgtttttcagagctga |
10396026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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