View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20533_low_3 (Length: 283)
Name: NF20533_low_3
Description: NF20533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20533_low_3 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 43427364 - 43427631
Alignment:
| Q |
1 |
aaatgctggctacgaaccagataacatcacatacagtcaacttattttcggattttgtaagacgaggaggttcgaagaagcacttaaggtaatcgatcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43427364 |
aaatgctggctacgaaccagataacatcacatacagtcaacttattttcggattttgtaagacgaggaggttcaaagaagcacttaaggtaatcgatcat |
43427463 |
T |
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| Q |
101 |
atgcaagctatcaatctttgggttgacatcaagacttggaccatcttgatccaagggtactgtgatgccggcgaactagatggtgcgttacttggtcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43427464 |
atgcaagctatcaatctttgggttgacatcaagacttggaccatcttgatccaagggtactgtgatgccggcgaactagatggtgcgttacttggtcttt |
43427563 |
T |
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| Q |
201 |
ataagatgatggaaaagtcttccagtccagatgctgaattgttggaagtactggttgatggttttatt |
268 |
Q |
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| T |
43427564 |
ataagatgatggaaaagtcttccagtccagatgctgaattgttggaagtactggttgatggttttatt |
43427631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 43435869 - 43436083
Alignment:
| Q |
1 |
aaatgctggctacgaaccagataacatcacatacagtcaacttattttcggattttgtaagacgaggaggttcgaagaagcacttaaggtaatcgatcat |
100 |
Q |
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||||| ||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| || |
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| T |
43435869 |
aaatgatggctacgagccagatagcatcacctacagtcaacttattttcggactttgtaagacggggaggtttgaagaagcacttaaggtaatcgatgat |
43435968 |
T |
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| Q |
101 |
atgcaagctatcaatctttgggttgacatcaagacttggaccatcttgatccaagggtactgtgatgccggcgaactagatggtgcgttacttggtcttt |
200 |
Q |
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| T |
43435969 |
atgaaagctaacaatatttgggttgatatcaagacttggactatcttgatccaagggtactgtgatgccggcaaactagatgatgcgttatttagtctct |
43436068 |
T |
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| Q |
201 |
ataagatgatggaaa |
215 |
Q |
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| T |
43436069 |
ataagatgattgaaa |
43436083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 43444063 - 43444195
Alignment:
| Q |
1 |
aaatgctggctacgaaccagataacatcacatacagtcaacttattttcggattttgtaagacgaggaggttcgaagaagcacttaaggtaatcgatcat |
100 |
Q |
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||||| ||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| | ||||| || |
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| T |
43444063 |
aaatgatggctacgagccagatagcatcacctacagtcaacttattttcggactttgtaagacggggaggtttgaagaagcacttaaggcattcgatgat |
43444162 |
T |
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| Q |
101 |
atgcaagctatcaatctttgggttgacatcaag |
133 |
Q |
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||| |||||| |||| || ||||| | |||||| |
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| T |
43444163 |
atgaaagctaacaatattcgggttaatatcaag |
43444195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 43444723 - 43444791
Alignment:
| Q |
128 |
atcaagacttggaccatcttgatccaagggtactgtgatgccggcgaactagatggtgcgttacttggt |
196 |
Q |
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| T |
43444723 |
atcaagacttggaccatcttgatccaagggtactgagatgccggcaaactagacgatgcgttacttggt |
43444791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 21332 - 21593
Alignment:
| Q |
1 |
aaatgctggctacgaaccagataacatcacatacagtcaacttattttcggattttgtaagacgaggaggttcgaagaagcacttaaggtaatcgatcat |
100 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| || ||| | ||||| |||||||||||||||||||| ||| || |
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| T |
21332 |
aaatgctggctacgagtcagataacatcacctacagtcaacttattttcggactttgcaaaacgggtaggtttgaagaagcacttaaggtaattgatgat |
21431 |
T |
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| Q |
101 |
atgcaagctatcaatctttgggttgacatcaagacttggaccatcttgatccaagggtactgtgatgccggcgaactagatggtgcgttacttggtcttt |
200 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||||||| ||| | |
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| T |
21432 |
atgcaagctaacaatatttgggttgatatcaagacttggaccatcttgatccaatggtactgtgatgcctgcaaactagacgatgcgttacttaatctct |
21531 |
T |
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| Q |
201 |
ataagatgatggaaaagtcttccagtccagatgctgaattgttggaagtactggttgatggtttt |
265 |
Q |
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| T |
21532 |
ataagatgattgaaa---ctaatgatgcagatgctgaattgttggaagttctggttgatggtttt |
21593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 40185777 - 40185725
Alignment:
| Q |
128 |
atcaagacttggaccatcttgatccaagggtactgtgatgccggcgaactaga |
180 |
Q |
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| T |
40185777 |
atcaagacttggaagatcttgatcaaagggtactgtgatgctggtgaactaga |
40185725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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