View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20533_low_4 (Length: 260)
Name: NF20533_low_4
Description: NF20533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20533_low_4 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 43427035 - 43427286
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43427035 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
43427134 |
T |
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| Q |
109 |
acgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggatttagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43427135 |
acgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggatttagt |
43427234 |
T |
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| Q |
209 |
tttcagggtaactaagaaatttgagtcaacagggtatactctttccaaggca |
260 |
Q |
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| T |
43427235 |
tttcagggtaactaagaaatttgagtcaacagggtatactctttccaaggca |
43427286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 43435540 - 43435791
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
108 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||| |||||||||||| ||||||||||| |
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| T |
43435540 |
gagatgaagagtgtcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
43435639 |
T |
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| Q |
109 |
acgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggatttagt |
208 |
Q |
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| T |
43435640 |
atgagcatatgatggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagt |
43435739 |
T |
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| Q |
209 |
tttcagggtaactaagaaatttgagtcaacagggtatactctttccaaggca |
260 |
Q |
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| T |
43435740 |
tttcagggtagctaagaaattcgagtcatcagggtatactctttccaaggca |
43435791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 43443734 - 43443985
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
108 |
Q |
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| T |
43443734 |
gagatgaagagtgtcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
43443833 |
T |
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| Q |
109 |
acgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggatttagt |
208 |
Q |
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| |||||||||||||||||||||||||||||| ||| || |||||||||| |||||||||||||| | ||| ||| |||||||| ||||||||||||| |
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| T |
43443834 |
atgagcatatgatggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagt |
43443933 |
T |
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| Q |
209 |
tttcagggtaactaagaaatttgagtcaacagggtatactctttccaaggca |
260 |
Q |
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| T |
43443934 |
tttcagggtagctaagaaattcgagtcatcagggtatactctttccaaggca |
43443985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 43422457 - 43422587
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
108 |
Q |
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|||||||||||||| | |||||||||| |||||||||| || |||||| | | |||| || |||| ||| ||||||| |||| ||| ||||||| |
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| T |
43422457 |
gagatgaagagtgtgaattatgaattggagattgatacttatatgaagataacaatgcagtttgtaaagaatcagatgatgaaggatgctgttaagcttt |
43422556 |
T |
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| Q |
109 |
acgagcatatgatggatagttcatataagcc |
139 |
Q |
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|||||| |||||||||| |||||||| |||| |
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| T |
43422557 |
acgagcttatgatggatggttcatatgagcc |
43422587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 21050 - 21254
Alignment:
| Q |
56 |
gatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagctttacgagcatatgatggatagttcatataagcctacagctccggattgc |
155 |
Q |
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||||||||||||||||| ||| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||| |
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| T |
21050 |
gatatcgaggcagcttcaaaagaataagatgatggaggatgttgtcaagctttatgagcatatgatggatagttcatataagccatcagttctggattgc |
21149 |
T |
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| Q |
156 |
attgtgcttttaaagagcctatctacaaaggataagccagatttggatttagttttcagggtaactaagaaatttgagtcaacagggtatactctttcca |
255 |
Q |
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||| |||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
21150 |
attatgcttttaaagagcacatctgcaagcgataagctggatttggatttagttttcagggtagctaagaaattcgagtaaacagggtatactctttcca |
21249 |
T |
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| Q |
256 |
aggca |
260 |
Q |
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||||| |
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| T |
21250 |
aggca |
21254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 40186262 - 40186020
Alignment:
| Q |
9 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
108 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| | | |||||||||||||| | |||| |
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| T |
40186262 |
gagatgaagagtgtcggtcatgaattggatctcaatacttccataaagatatcgaggcagcttcaagagaataggatgatgga---------cgggcttc |
40186172 |
T |
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| Q |
109 |
acgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggatttagt |
208 |
Q |
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| ||||||||||||||||||||||| ||||| ||| || ||| |||||| |||||||||||| | | || || ||| |||||| |||||||||| | |
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| T |
40186171 |
atgagcatatgatggatagttcatacaagccatcagttctggactgcattatgcttttaaagaacatcgctgaaagcgatgagccaggtttggatttatt |
40186072 |
T |
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| Q |
209 |
tttcagggtaactaagaaatttgagtcaaca--gggtatactctttccaagg |
258 |
Q |
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|||||||||| |||| ||||| ||||| ||| ||||||||||||||||||| |
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| T |
40186071 |
tttcagggtagctaacaaattcgagtcgacagggggtatactctttccaagg |
40186020 |
T |
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