View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20534_high_8 (Length: 242)
Name: NF20534_high_8
Description: NF20534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20534_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29117305 - 29117082
Alignment:
| Q |
1 |
ctttttggaggacagtgaataatgaaccaaaagtggcaaagcaaagatacatttggatgttctataaccttatgtttaagaatttggtaagtaatatatt |
100 |
Q |
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| T |
29117305 |
ctttttggaggacagtgaataatgaaccaaaagtggcaaagcaaagatacatttggatgttctataaccttatgtttaagaatttggtaagtaatatatt |
29117206 |
T |
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| Q |
101 |
tgttcttatatgtgatgagaatttgagataggtacaatttcttatatgtaaatgtcacaggtgaagactatatctgttccaattgatgaacctcaacaac |
200 |
Q |
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| T |
29117205 |
ttttcttatatgtgatgaaaatttgagataggtacaatttcttatatgtaaatgtcacaggtgaagactatatctgttccaattgatgaacctcaacaac |
29117106 |
T |
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| Q |
201 |
cagtgtccaactccaagcagcaga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
29117105 |
cagtgtccaactccaagcagcaga |
29117082 |
T |
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