View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20534_low_1 (Length: 843)
Name: NF20534_low_1
Description: NF20534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20534_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 43325203 - 43325652
Alignment:
| Q |
1 |
gctaatgggaagaagttttgttggtcgtttgttacaatgagcatctgacttccatgaataaccccttctcaaaagggccatgaacaaccccaaactagtt |
100 |
Q |
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| T |
43325203 |
gctaatgggaagaagttttgttggtagtttgttaccatgagcatctggcttccatgaataaccccttctcaaaagggccatgaacaaccccaaactagtt |
43325302 |
T |
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| Q |
101 |
tttatttttatatcttacatttttcaaccaataacatagtgccaatcaaaacggttacaactatttgctgtacttgccaatttccaaatgcaaaagataa |
200 |
Q |
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| T |
43325303 |
tttatttttatagcttacatttttcaaccaataacatagtgccaatcaaaacggttacaactatttgctgtacttgccaatttccaaatgcaaaagacaa |
43325402 |
T |
|
| Q |
201 |
taaaattttgacattgccaaagaagagaaatagtgaaaatacaaaccagtgcttttatttttccaacaaagatccacagatcatagttatatgatacatt |
300 |
Q |
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| T |
43325403 |
taaaattttgacattgccaaagaagagaaatagtgaaaatacaaaccagtgcttttatttttccaacaaagatctacagatcatagttatatgatacatt |
43325502 |
T |
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| Q |
301 |
gctccccaaagtcagaaatacataaataaaacaccacattagacattactaaaaccacacataactagaattagaaattagtgccttattcacaccgaaa |
400 |
Q |
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| T |
43325503 |
gctccccaaagtcagaaatacataaataaaacaccacattagacattactaaaaccacacataactagaattagaaattagtgccttattcacaccgaaa |
43325602 |
T |
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| Q |
401 |
aagacacataatagccttctgtaacaggataatcataccaagttttataa |
450 |
Q |
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| T |
43325603 |
aagacacttaatagccttctgtaacaggataatcataccaagttttataa |
43325652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 439 - 776
Target Start/End: Complemental strand, 43325178 - 43324841
Alignment:
| Q |
439 |
caagttttataaaacacggttctttaatgacaattgacaagcaatatattctatacaagaaatacttatggggctctagttgttaggttcatttggtaat |
538 |
Q |
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| T |
43325178 |
caagttttataaaacacggttctttaatgacaattgacaagcaatatattctatacaagaaatacttatggggctctagttgttaggttcatttggtaat |
43325079 |
T |
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| Q |
539 |
ggtatatcacatcacataatatccaaatcactgttttttaataaaagagattctacattagtcaaacaaaaagcgagattctacagaagtggaacataga |
638 |
Q |
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| T |
43325078 |
ggtatatcacatcacataatatccaaatcactgttttttaataaaagagattctacattagtcaaacaaaaagagagattctacagaagtggaacataga |
43324979 |
T |
|
| Q |
639 |
ttctacatagatatgtttatctgaagtggacattttattataattttagtagcatcttcgttaagctagagcaatgagaacttgatatactttctaagaa |
738 |
Q |
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| T |
43324978 |
ttctacttagatatgtttatctgaagtggacattttattataattttagtagcatcttcgttaagctagagcaatgagaacttgatatactttctaagaa |
43324879 |
T |
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| Q |
739 |
ctttcaaaccattgaataaattattttgcattgtacaa |
776 |
Q |
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| T |
43324878 |
ctttcaaaccattgaataaattattttgcattatacaa |
43324841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 43325680 - 43325734
Alignment:
| Q |
389 |
ttcacaccgaaaaagacacataatagccttctgtaacaggataatcataccaagt |
443 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
43325680 |
ttcacatcgaaaaagacacatagtagccttctgtattaggataatcgtaccaagt |
43325734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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