View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20534_low_3 (Length: 496)
Name: NF20534_low_3
Description: NF20534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20534_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Complemental strand, 33918893 - 33918425
Alignment:
| Q |
7 |
agcaaagggaaacattccatcaaagtggaaaggagtttgtcaagttagagaaaatttcaactctactccacaaactgcaacaagaagataattggtgcta |
106 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918893 |
agcaatgggaaaaattccatcaaagtggaaaggagtttgtcaagttagagaaaatttcaactctactccacaaactgcaacaagaagataattggtgcta |
33918794 |
T |
|
| Q |
107 |
gatgcttcctaaaaggaatgactgatcacactaagaacctcatccttgatcctcggaaacaccgacacttcagaatatctctcaaccagagatgctactg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918793 |
gatgcttcctaaaaggaatgactgatcacactaagaacctcatccttg-------gaaacaccgacacttcagaatatctctcaaccagagatgctactg |
33918701 |
T |
|
| Q |
207 |
gccatggatctcacacagcttcaacatcagctggatattttgtaaaaaatgcaaattattgaggacttgcttgcttctggtttagcaagaggaggagcta |
306 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
33918700 |
gccatggatctcacacagcttcaacat-agctggatattttgtaaaaaatgcaaattatagaggacttgcttacttctggtttagcaagaggaggagctg |
33918602 |
T |
|
| Q |
307 |
ccttagctcatttggctatctacaaagcttgctgggacgttcctgttggacggtgctgatatcctcaaagcatttgacatggcaatacatgatggtgtag |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33918601 |
ccttagctcatttggctatctacaaagcttgctgggacgttcctgttggacgatgctgatatcctcaaagcatttgacatggctatacatgatggtgtag |
33918502 |
T |
|
| Q |
407 |
atatctcagctgtttctcttggcattagcattcctttgttttcttatgttgatcaactcgacacgatagcaattggt |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
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| T |
33918501 |
atatctcagctgtttctcttggcattagcattcctttgttttcttatgttgatcaacacggcacgataggaattggt |
33918425 |
T |
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Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 483
Target Start/End: Original strand, 35082521 - 35082989
Alignment:
| Q |
7 |
agcaaagggaaacattccatcaaagtggaaaggagtttgtcaagttagagaaaatttcaactctactccacaaactgcaacaagaagataattggtgcta |
106 |
Q |
| |
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||||| ||| || ||||||||||||||||||||||||||||||||| | ||||| || ||||| |||||||||||||||||||||||||||||||| |
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| T |
35082521 |
agcaatggggaaaattccatcaaagtggaaaggagtttgtcaagttggtgaaaaatttaactc-----cacaaactgcaacaagaagataattggtgcta |
35082615 |
T |
|
| Q |
107 |
gatgcttcctaaaaggaatgactgatcacactaagaacctcatccttgatcctcggaaacaccgacacttcagaatatctctcaaccagagatgctactg |
206 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||| | |||||||||| || |
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| T |
35082616 |
gatggttcctaaaaggaataactgatcacactaagaacctcgtccttg-------gaaacaatgacactacagaatatctctcagctagagatgctattg |
35082708 |
T |
|
| Q |
207 |
gccatggatctcacacagcttcaacatcagctggatattttgtaaaaaatgcaaattattgaggacttgcttgcttctggtttagcaagaggaggagcta |
306 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
35082709 |
gccatggaactcacacagcttcaacagcagctggatattttgtagaaaatgcaaattatagagg----ccttgcttctggtttagcaagaggaggagcac |
35082804 |
T |
|
| Q |
307 |
ccttagctcatttggctatctacaaagcttgctgggacgttcctgttggac--------ggtgctgatatcctcaaagcatttgacatggcaatacatga |
398 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| || |
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| T |
35082805 |
ctttagctcacttggctatctacaaagcttgctgggacgttcctgttggacactgtactgatgctgatatcctcaaagcatttgacatggctatacacga |
35082904 |
T |
|
| Q |
399 |
tggtgtagatatctcagctgtttctcttggcattagcattcctttgttttcttatgttgatcaactcgacacgatagcaattggt |
483 |
Q |
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|||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
35082905 |
tggtgtagatgtcttaactgtttctcttggcattggcattcctttgttttcttatgctgatcaacgcgacacgatagcaattggt |
35082989 |
T |
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