View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20534_low_7 (Length: 360)
Name: NF20534_low_7
Description: NF20534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20534_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 170 - 342
Target Start/End: Complemental strand, 6900709 - 6900537
Alignment:
| Q |
170 |
acgagagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaaca |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6900709 |
acgagagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaaca |
6900610 |
T |
|
| Q |
270 |
ttctcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6900609 |
ttctcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagc |
6900537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 6909007 - 6909175
Alignment:
| Q |
1 |
acatgtattgaattaaaggaaacaagcaaatacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6909007 |
acatgtattgaattaaaggaaacaagcaaagacttctaatcatgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacattta |
6909106 |
T |
|
| Q |
101 |
taagcacaaggcacagatagcgtgcaaactaaagaacaatgcaaccaatgatctaactaagatctgcat |
169 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6909107 |
taagcacaagacacatatagtgtgcaaacgaaacaacaatgcaaccaatgatctaactatgatctgcat |
6909175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 173 - 342
Target Start/End: Original strand, 44930721 - 44930890
Alignment:
| Q |
173 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
272 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||| || ||||| | |
|
|
| T |
44930721 |
agagtctgaagacgacactcgagaaaattctcaacagtgagagccaagacataatcgagcttgttctgagtttcatcaagcaagccatgcttaaacatcc |
44930820 |
T |
|
| Q |
273 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagc |
342 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||| |
|
|
| T |
44930821 |
tcctcaaaagagcttcaccctcgaagatccgacgagggttcttttcatccagtgtcaaaagtgttctagc |
44930890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44925395 - 44925477
Alignment:
| Q |
1 |
acatgtattgaattaaaggaaacaagcaaatacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacatt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44925395 |
acatgtattgaattaaaggaaacaagcaaagacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacatt |
44925477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 44925847 - 44925909
Alignment:
| Q |
82 |
ttgcaaaataatacatttataagcacaaggcacagatagcgtgcaaactaaagaacaatgcaa |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
44925847 |
ttgcaaaataatacatttataagcacaagacacagatagcgtggaaactaaacaacaatgcaa |
44925909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 173 - 342
Target Start/End: Complemental strand, 201307 - 201138
Alignment:
| Q |
173 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
201307 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
201208 |
T |
|
| Q |
273 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagc |
342 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
201207 |
tcctcaaaagtgcttcaccttcaaagatccgacgagggttcttctcatccagtgtcaaaagtgtcctagc |
201138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 173 - 342
Target Start/End: Original strand, 207937 - 208106
Alignment:
| Q |
173 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
207937 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
208036 |
T |
|
| Q |
273 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctagc |
342 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
208037 |
tcctcaaaagtgcttcaccttcaaagatccgacgagggttcttctcatccagtgtcaaaagtgtcctagc |
208106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 201980 - 201812
Alignment:
| Q |
1 |
acatgtattgaattaaaggaaacaagcaaatacttctaatcctgtaactctaggaggatacaaacaatagatcaatagacattgcaaaataatacattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
201980 |
acatgtattgaattaaaggaaacaagcaaagacttctaatcctgtaactctaggaggatacaaacaattgatcaatagacattgcaaaataatacattta |
201881 |
T |
|
| Q |
101 |
taagcacaaggcacagatagcgtgcaaactaaagaacaatgcaaccaatgatctaactaagatctgcat |
169 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
201880 |
taagcacaagacacagatagcgtgcaaactaaacaacaatgcaaccaatgatctaactaagatctgcat |
201812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 173 - 341
Target Start/End: Complemental strand, 24652590 - 24652422
Alignment:
| Q |
173 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24652590 |
agagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcaagcttgttttgtgtttcatcaagaagaccatgtttgaacattc |
24652491 |
T |
|
| Q |
273 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagcgtcctag |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24652490 |
tcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagtgtcctag |
24652422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 176 - 323
Target Start/End: Complemental strand, 29513888 - 29513741
Alignment:
| Q |
176 |
gtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcc |
275 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| || | |
|
|
| T |
29513888 |
gtctgaagacggcgttcaagaaaattctcaacagtgagagccaagacataatcgagtttgttctgagtttcatcaagaagaccatgcttaaacatccttc |
29513789 |
T |
|
| Q |
276 |
tcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatcca |
323 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29513788 |
tcaacagcgcttcaccctcaaagatacgacgaggattcttctcatcca |
29513741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University