View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20535_high_1 (Length: 967)
Name: NF20535_high_1
Description: NF20535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20535_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 29 - 535
Target Start/End: Complemental strand, 9832524 - 9832010
Alignment:
| Q |
29 |
acttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcaccgc |
128 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832524 |
acttactagttggtgtcaaaccacttggtcatctccattgcaggcacagaagcgttacctctggccatggagaagtaggtatcgaatccaatctcaccgc |
9832425 |
T |
|
| Q |
129 |
cagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatccc |
228 |
Q |
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|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832424 |
cagtccatccgtatcttgggggaacagcaccgaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatccc |
9832325 |
T |
|
| Q |
229 |
ggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832324 |
ggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcg |
9832225 |
T |
|
| Q |
329 |
aacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatgccattttctgccatatcagataaaaattgaaaagaaaaatgtcagtcc |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832224 |
aacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatgccattttctgccatatcagataaaaattgaaaagaaaaatgtcagtcc |
9832125 |
T |
|
| Q |
429 |
tctctagtttaaaatcacatctgttatattcctatgtcagaaattatacaccttaca--------tactacaatgtgttatttgaaaatatctttagaaa |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
9832124 |
tctctagtttaaaatcacatctgttatattcctatgtcagaaattatacacctcacatacattattactacaatgtgttatttgaaaatatctttagaaa |
9832025 |
T |
|
| Q |
521 |
attttacatcttatg |
535 |
Q |
| |
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||||||||||||||| |
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| T |
9832024 |
attttacatcttatg |
9832010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 608 - 938
Target Start/End: Complemental strand, 9831938 - 9831608
Alignment:
| Q |
608 |
tgaatgtatccacatgtgtttgtgtcatgtcagtatacaccttcaaccgaaagtgttaaatgtcgattgtgttgatgtgaatcacatgagcacaatgaat |
707 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
9831938 |
tgaatgtatccacatgtgtttgtgtcatgtcggtatacaccttcaatcgaaagtgttgaatgtcgattgttttgatttgaatcacatgagcacaatgaat |
9831839 |
T |
|
| Q |
708 |
gttttaaataaaggtctatgaatgcgatagatgccgcgacatctaagttttcaatgcctcggcaactataacctaaccgcgactgcaaccattacagcca |
807 |
Q |
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||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9831838 |
gttttaaataaagatctatgaatgcaatagatgccacgacatctaagttttcaatgcctcggcaactataacctaaccgcgactgcaaccattaccgcca |
9831739 |
T |
|
| Q |
808 |
ccacgatttaaaacggtattacacatgatcattaaatttttattttaataacaacaacaaattagaacaaaaacagatctaaattaagcaagtaagtatt |
907 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
9831738 |
ccacgatttaaaacggtattatacatgatcattgaatttttattttaataacaacaacaaattagaagaaaaacagatctaaattaagcaagtaagcatt |
9831639 |
T |
|
| Q |
908 |
aagataataacaataagaattaccagtaatg |
938 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
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| T |
9831638 |
aagataataacaataataattaccagtaatg |
9831608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 27 - 387
Target Start/End: Original strand, 33470131 - 33470491
Alignment:
| Q |
27 |
tcacttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcacc |
126 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||||| ||||| || ||||| |||||||||||||||||||| |
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| T |
33470131 |
tcacttactagttggtgtcgaaccacttggtcatctccatagcagggacggtggcattacctctagccattgaaaagtaagtatcgaatccaatctcacc |
33470230 |
T |
|
| Q |
127 |
gccagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatc |
226 |
Q |
| |
|
||||||||||| || || || ||||| || || | ||||||| |||| || || ||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
33470231 |
accagtccatccatacctgggtggaacggccccgagagtggcggtagtatcaagtacatgatcatagtaagtaaaagtgttgcttgggatatacttgatc |
33470330 |
T |
|
| Q |
227 |
ccggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaaggg |
326 |
Q |
| |
|
|| || ||||||||||||||||| ||||| || || ||||||| ||||||| |||||||||||| |||||||| || |||||||||||||| | | |
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| T |
33470331 |
ccaacatcagacatctgtttccagatggatgctcttagatcagcagaaaccttcttcaaatcctcggcactgctctttttgtcccagaatgattccaaag |
33470430 |
T |
|
| Q |
327 |
cgaacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatgccatttt |
387 |
Q |
| |
|
| || || | |||||||||||| ||||| ||||| ||||||||||| || || |||||||| |
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|
| T |
33470431 |
caaatttcaactctctcttgggtcccatacgagggtatccaacaatgtgagaagccatttt |
33470491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 29 - 380
Target Start/End: Complemental strand, 35945308 - 35944957
Alignment:
| Q |
29 |
acttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcaccgc |
128 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| |||| || |||||||| || | |
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| T |
35945308 |
acttactagttggtgtcaaaccacttggtcatttccatagctggcacagatgcatttcctctcgccatggagaagtaaatatcaaaaccaatctccccac |
35945209 |
T |
|
| Q |
129 |
cagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatccc |
228 |
Q |
| |
|
|| ||||| ||||| ||||||||||| | |||||| || || | | || ||||||||||||| ||| |||||||| || |||| || || || |
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| T |
35945208 |
cattccatttatatctgtcaggaactgcaccgagcatggctgttgtgtccaatacttgatcatagtatgagaaggtgttgcttggaatatgctgaattcc |
35945109 |
T |
|
| Q |
229 |
ggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcg |
328 |
Q |
| |
|
||| || |||||| |||||||||| || || |||| |||||| |||| || ||| ||||| || || ||||| |||||| |||||||| ||||| |
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| T |
35945108 |
agcatcggccatctgcttccagatagctgatctaaggttagcagcaacctgcttcaattcctcagcactactctttccatcccaaaatgattccagggca |
35945009 |
T |
|
| Q |
329 |
aacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatg |
380 |
Q |
| |
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||||| ||||| |||||||| |||||||| ||||| ||||||||||| |||| |
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|
| T |
35945008 |
aacttaagctccctcttgggtcccatgcggggataaccaacaatatgggatg |
35944957 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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