View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20535_high_2 (Length: 785)

Name: NF20535_high_2
Description: NF20535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20535_high_2
NF20535_high_2
[»] chr8 (3 HSPs)
chr8 (663-784)||(12934377-12934498)
chr8 (97-270)||(12933811-12933984)
chr8 (120-157)||(36999937-36999974)
[»] chr7 (2 HSPs)
chr7 (663-783)||(15300163-15300283)
chr7 (90-127)||(6692086-6692123)
[»] chr4 (5 HSPs)
chr4 (663-784)||(28608105-28608227)
chr4 (97-270)||(28608621-28608794)
chr4 (663-784)||(14177647-14177768)
chr4 (97-247)||(14177081-14177231)
chr4 (105-158)||(20706182-20706234)
[»] chr6 (2 HSPs)
chr6 (90-127)||(796698-796735)
chr6 (90-127)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (90-127)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 663 - 784
Target Start/End: Original strand, 12934377 - 12934498
Alignment:
Q  663 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 762  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| |||||||| ||||| ||||||||||||   ||||    
T  12934377 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc 12934476  T
Q  763 ctggaaaggaacattgggaagc 784  Q
    | ||||| ||||||||||||||    
T  12934477 cgggaaaagaacattgggaagc 12934498  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  97 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 195  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  196 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 270  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  120 catggagatttggaagaggagatttatatggagcaacc 157  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 663 - 783
Target Start/End: Original strand, 15300163 - 15300283
Alignment:
Q  663 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 762  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| |||||||| ||||| ||||||||||||   ||||    
T  15300163 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc 15300262  T
Q  763 ctggaaaggaacattgggaag 783  Q
    | ||||| |||||||||||||    
T  15300263 cgggaaaagaacattgggaag 15300283  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  90 gagcagttggatgtgaaaactgcatttcttcatggaga 127  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 663 - 784
Target Start/End: Complemental strand, 28608227 - 28608105
Alignment:
Q  663 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 762  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| |||||||| ||||| ||||||||||||   ||||    
T  28608227 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc 28608128  T
Q  763 ctgg-aaaggaacattgggaagc 784  Q
    | || ||| ||||||||||||||    
T  28608127 cgggaaaaagaacattgggaagc 28608105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 270
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  97 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 195  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  196 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 270  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 784
Target Start/End: Original strand, 14177647 - 14177768
Alignment:
Q  663 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 762  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| | |||||| ||||| ||||||||||||   ||||    
T  14177647 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgtagttggagttgttagcaggtttctttccaatc 14177746  T
Q  763 ctggaaaggaacattgggaagc 784  Q
    | ||||| ||||| ||||||||    
T  14177747 cgggaaaagaacactgggaagc 14177768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 247
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  97 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 195  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  196 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 247  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  105 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 158  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  90 gagcagttggatgtgaaaactgcatttcttcatggaga 127  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  90 gagcagttggatgtgaaaactgcatttcttcatggaga 127  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  90 gagcagttggatgtgaaaactgcatttcttcatggaga 127  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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