View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20535_low_1 (Length: 313)
Name: NF20535_low_1
Description: NF20535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20535_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 4383455 - 4383186
Alignment:
| Q |
18 |
ctaagcatacacaaggggccatgtaaacgattactagtgatgatagaagagtatttgtataaaaataacctctattcttgcattttgcgttgcgtttgtt |
117 |
Q |
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| T |
4383455 |
ctaagcatacacaaggggccatgtaaacgattactagtgaggatagaaaagtatttgtataaaaataacctctatacttgcattttgcgttgcgtttgtt |
4383356 |
T |
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| Q |
118 |
ttgtagcagttaagattatgctatactatttttgagaagttatgcaagggtgggatatgtagaagaaccttgacatgattggtttgtaattctttgttaa |
217 |
Q |
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| T |
4383355 |
ttgtagcagttaacattatgctatactatttttgagaagttatgcaagggtgggatatgtagaagaacattgacatgattggtttgtgattctttgttaa |
4383256 |
T |
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| Q |
218 |
ttgtttgcaggaatcatctagtacatacgagcttacagaggtaagcacatgaggcaaacttggaaggcac |
287 |
Q |
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| T |
4383255 |
ttgtttgcaggaatcatctagtacatacgagcttacagaggtaagctcgggaggcaaacttggaaggcac |
4383186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 41 - 302
Target Start/End: Original strand, 4111366 - 4111632
Alignment:
| Q |
41 |
taaacgattactagtgatgatagaagagtatttgtataaaaataacctctattcttgcattttgcgttgcgtttgttttgtagcagttaagattatg--- |
137 |
Q |
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| T |
4111366 |
taaatgattactagtgaggatagaaaagtaattgtataaaaataacctctattcttgcattttgtgtgctgtttgttttgtagcagttagtattttgttt |
4111465 |
T |
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| Q |
138 |
--ctatactatttttgagaagttatgcaagggtgggatatgtagaagaaccttgacatgattggtttgtaattctttgttaattgtttgcaggaatcatc |
235 |
Q |
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| T |
4111466 |
tgctatactatttttgagaagttatgcaagggtgggatatgtagaagaacattgacatgattggtttgtgattctttgttaattgtttgcaggaatcatc |
4111565 |
T |
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| Q |
236 |
tagtacatacgagcttacagaggtaagcacatgaggcaaacttggaaggcacaatcttcatcttcat |
302 |
Q |
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| T |
4111566 |
tagtacatacgagcttacagaggtaagctcgggaggcaaacttggaaggcacaatcttcatcttcat |
4111632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 4768601 - 4768352
Alignment:
| Q |
46 |
gattactagtgatgatagaagagtatttgtataaaaataacctctattcttgcattttgcgttgcgtttgttttgtagcagttaagattatgctatacta |
145 |
Q |
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| T |
4768601 |
gattactagtgaggatagaaaagtaattgtataaaaataacctctataattgcattttgtgtgctgtttgttttgtagcagttagcattttgctatacta |
4768502 |
T |
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| Q |
146 |
tttttgagaagttatgcaagggtgggatatgtagaagaaccttgacatgattggtttgtaattctttgttaattgtttgcaggaatcatctagtacatac |
245 |
Q |
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| T |
4768501 |
ttttttagaagttatgcaagggtgg-atatgtagaagaaacttgacatgattggtttgtgattctttggtaattgtttgcaggaatcatctagtacatac |
4768403 |
T |
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| Q |
246 |
gagcttacagaggtaagcacatgaggcaaacttggaaggcacaatcttcat |
296 |
Q |
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| T |
4768402 |
gagcttacagaggtaagcacaggaggcaaacttggaagacacaatcttcat |
4768352 |
T |
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