View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20536_high_2 (Length: 442)
Name: NF20536_high_2
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 54904147 - 54903736
Alignment:
| Q |
18 |
ctagcttccaagacatcggagccactgtcaataatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54904147 |
ctagcttccaagacatcggagccactgtcaataatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcaggagcatttat |
54904048 |
T |
|
| Q |
118 |
caatcactctcatgttgaaggtgctgctgtgacaacacaatcttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904047 |
caatcactctcatgttgaaggtgctgctgtgaaaacacaatcttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagt |
54903948 |
T |
|
| Q |
218 |
gaggattttaacaatgatcaaatgttgcacaataactttaagtttgcttctcccagttctcatttttcttcgacagacatggttgctgttcctttggagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54903947 |
gaggattttaacaatgatcaaatgttgcacaataactttaagtttgcttctcccagttctcatttttcttcgacagacattgttgctgttcctttggagg |
54903848 |
T |
|
| Q |
318 |
aaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctccatggtacacacaacatcaaaatgcgagttcttccttcaacaataccttgga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54903847 |
aaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctccatggtacacacaacatcaaaatgcgagttcttccttcaacaataccttgga |
54903748 |
T |
|
| Q |
418 |
ttatcttgcttc |
429 |
Q |
| |
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|||||||||||| |
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| T |
54903747 |
ttatcttgcttc |
54903736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 419
Target Start/End: Complemental strand, 54888022 - 54887603
Alignment:
| Q |
21 |
gcttccaagacatcggagccactgtcaataatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaa |
120 |
Q |
| |
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|||||||||||||| |||| | ||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||||| ||| |||||| || || |
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| T |
54888022 |
gcttccaagacatcagagctaatgttaataatgcaaatagttttctttcttgcatctcaagcaatcacctacaaacacataattcaagagcattcataaa |
54887923 |
T |
|
| Q |
121 |
tcactctcatgttgaaggtgctgctgtgacaacacaatcttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgag |
220 |
Q |
| |
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|||| | ||||| |||| ||||| || | | ||||||||||||| | ||||||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
54887922 |
tcacccatctgttggaggtcctgctatggaacaaaaatcttttaaccctgctacaagtggttcctataactttgcttccaatccttctccattgagtgag |
54887823 |
T |
|
| Q |
221 |
gattttaacaatgatcaaatgttgcacaataactttaagtttgcttctcccagttctc---------------------atttttcttcgacagacatgg |
299 |
Q |
| |
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|||||||| ||||||||||| | ||||||| ||| |||||||| || | |||||||| |||||||||||| | | | |
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| T |
54887822 |
gattttaataatgatcaaatatctcacaatagcttaaagtttgcctcactcagttctcaatttaagaaaaatccagatgatttttcttcgatacgcgtca |
54887723 |
T |
|
| Q |
300 |
ttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctccatggtacacacaacatcaaaatgcgagttcttc |
399 |
Q |
| |
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||| ||||||||| |||||||| ||||||||||||||||| |||||||||| |||| ||| ||| |||| ||||| || || ||||||| | ||||||| |
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| T |
54887722 |
ttgatgttcctttagaggaaacgatgcaatgtcaagatggattacttgggagtgttgtaacggcttcatgttacacgcatcagcaaaatgtgggttcttc |
54887623 |
T |
|
| Q |
400 |
cttcaacaataccttggatt |
419 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
54887622 |
cttcaacaataccttggatt |
54887603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 54893646 - 54893388
Alignment:
| Q |
21 |
gcttccaagacatcggagccactgtcaataatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaa |
120 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||| || || ||||||||| |||| ||||||| | || |
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| T |
54893646 |
gcttccaagacatcagagatactgttaataatgcaaatagttctctttcttgcatctcaagcaataacctatcaacacataattcaggagcatttgtaaa |
54893547 |
T |
|
| Q |
121 |
tcactctcatgttgaaggtgctgctgtgacaacacaatcttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgag |
220 |
Q |
| |
|
||||||| ||||| ||| ||| ||| | || |||||||||| || | ||| |||||| |||||||||||||||||| || ||||||||||||| |
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| T |
54893546 |
tcactcttctgttggaggggcttacgtggaaccaaaatcttttaatcctgctacatatggttcatctaactttgcttccaatccttctccattgagtgag |
54893447 |
T |
|
| Q |
221 |
gattttaacaatgatcaaatgttgcacaataactttaagtttgcttctcccagttctca |
279 |
Q |
| |
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|||||||||||||||||||| | ||||| ||| || ||||| |||||||||||||| |
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| T |
54893446 |
gattttaacaatgatcaaatttctggcaatagcttaaattttgcctctcccagttctca |
54893388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 300 - 429
Target Start/End: Complemental strand, 54893352 - 54893220
Alignment:
| Q |
300 |
ttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctccatggtacaca---caacatcaaaatgcgagttc |
396 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| || || ||||||| || || |
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| T |
54893352 |
ttgctgttccttcggaggaagcgatgcaatgtcaagatggcttacttgggaatgttgtaaaggcttcatgttacacgacgcagcagcaaaatgtcagctc |
54893253 |
T |
|
| Q |
397 |
ttccttcaacaataccttggattatcttgcttc |
429 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| |
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| T |
54893252 |
ttccttcaacaataccttggactctcttgcttc |
54893220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 11186426 - 11186503
Alignment:
| Q |
50 |
aatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactct |
127 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| ||| |||| | || |||| ||||||||||||||||||| |
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| T |
11186426 |
aatgcaaattgttctctttcttgcatctcaagcaatcaactactaacataaaattcagcagcatttatcaatcactct |
11186503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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