View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20536_high_7 (Length: 324)
Name: NF20536_high_7
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 29532543 - 29532253
Alignment:
| Q |
17 |
caccataagccgctacctctatgcaacatcaaatatcaatcttccaaaattcttcaagaaatctaagatctcttctgtgtggagcccttatgctaattgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29532543 |
caccataagccgctacctctatgcaacatcaaatatcaatcttccaaaattcttcaagaaatctaagatctcttctgtttggagcccttatgctaattgg |
29532444 |
T |
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| Q |
117 |
atgggatacatagctgtttccaccaacgaagaagagattaaacgattaggacgccgtgacataggtatgtaccctatactcttaatttacccactcataa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29532443 |
atgggatacatagctgtttccaccaacgaagaagagattaaacgattaggacgccgtgacataggtatgtaccctatactcttaattta-ccactcataa |
29532345 |
T |
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| Q |
217 |
aataaagataataagtgcttctcaaactgaatttttgacacaaaagactatatatt--tatattgtttcttctctctctttgggtgtctgtg |
306 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
29532344 |
aataaagatagtaagtgcttctcaaactgaatttttgacacaaaagactatatatttatatattgtttcttctctctctttgggtgtttgtg |
29532253 |
T |
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