View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20536_high_8 (Length: 306)
Name: NF20536_high_8
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_high_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 37058074 - 37058336
Alignment:
| Q |
58 |
ccccgcatttcttatttgataataaccacattttaagttttaacacagactcttcctaattaagtctttcttttagtcatgtgaaaggaaaaggcacgtt |
157 |
Q |
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| T |
37058074 |
ccccgcattttttatttgataataaccacattttaagttttaacacagactcttcccaattaagtctttctttatgtcgtgtaaaaagaaaaggcacgtt |
37058173 |
T |
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| Q |
158 |
cattttagtg--------------agactgggtcaaactgagatacatgcatgaaaatgacatatgtgacatgactgatataagagaggagtggatccaa |
243 |
Q |
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| T |
37058174 |
cattttagtgttgcataaccactgagactgggtcaaactgagatacatgcatgaaaatgacatatgtgacatgactgatgtaagagaggagtggatccaa |
37058273 |
T |
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| Q |
244 |
actataaatacacatcttgttgcataacataattatcataaacctgcatgcaaacaaagcaaa |
306 |
Q |
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| T |
37058274 |
actataaatacacatcttgttgcataacataattatcataaacctgcatgcaaacaaagcaaa |
37058336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 76 - 306
Target Start/End: Original strand, 37065570 - 37065814
Alignment:
| Q |
76 |
ataataaccacattttaagttttaacacagactcttcctaattaagtctttcttttagtcatgtgaaaggaaaaggcacgttcattttagtg-------- |
167 |
Q |
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| T |
37065570 |
ataataaccacattttaagtttgaacacaaactcttcccaattaagtctttctttatgtcgtgtaaaaagaaaaggcacgttcattttagtgttgcataa |
37065669 |
T |
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| Q |
168 |
------agactgggtcaaactgagatacatgcatgaaaatgacatatgtgacatgactgatataagagaggagtggatccaaactataaatacacatctt |
261 |
Q |
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| T |
37065670 |
ccactgagactgggtcaaactgagatacatgcatgaaaatgacatatgtgacatgactgatgtaagagaggagtggatccaaactataaatacacatctt |
37065769 |
T |
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| Q |
262 |
gttgcataacataattatcataaacctgcatgcaaacaaagcaaa |
306 |
Q |
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| T |
37065770 |
gttgcataacataattatcataaacctgcatgcaaacaaagcaaa |
37065814 |
T |
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