View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20536_low_1 (Length: 694)
Name: NF20536_low_1
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 165 - 686
Target Start/End: Complemental strand, 40783731 - 40783216
Alignment:
| Q |
165 |
ttagcgaacacacattggtttctttagtagcaagtaggactataattattgagtatttgtgtctctatttctgtcaaagttaatgaagtgtcaaacaaaa |
264 |
Q |
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| T |
40783731 |
ttagcgaacacgcattggtttctttagtagcaagtaggactataattattgagtatttgtgtctctatttctgtcaaagttaatgaagtgtcaaacaaaa |
40783632 |
T |
|
| Q |
265 |
tactctaatgaataatttatgtcaagtactctccttttgcttataattctcaatattactcaattattgtttacaaaatatatactcaatcattaaacaa |
364 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40783631 |
tactctaatgaataatttatgtcaactactctccttttgcttataattctcaatattactcaattattgtttacgaaatatatactcaatcattaaacaa |
40783532 |
T |
|
| Q |
365 |
caatgatatatgtatatcatttttattctatattcattcaacacatca-----nnnnnnnnatgtcttctctcttcttatcacatcatcaatctatcgca |
459 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40783531 |
caatgatatatgtatatcatttttattctatatttattcaacacatcattttttttcttctatgtcttctctcttcttatcacatcatcaatctatcgca |
40783432 |
T |
|
| Q |
460 |
tctattacatcnnnnnnnnnnnnnnnctttctctctctttatctcaaggtgatacacgtcaatggggatattagcaaaacattttccatatgctactttt |
559 |
Q |
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| T |
40783431 |
tctattacat-------------tttttttttctctttttatctcaaggtgatacacgtcaatggggatattagcaaaacatttttcatatgctactttt |
40783345 |
T |
|
| Q |
560 |
ttggttaaaaaataccaactact--actagtgaagaggaaataaagtaatatatacctggcagtggcactgtagatggaaacaaacaaatagtagtaact |
657 |
Q |
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| T |
40783344 |
ttggttaaaaaataccaactagtgaagaggaaaaaaggaaataaagtaatatatacctggcagtggcactgtagatggaaacaaacaaatagtagtaact |
40783245 |
T |
|
| Q |
658 |
atctaagcaccatgtgggccgagaattat |
686 |
Q |
| |
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| T |
40783244 |
atctaagcaccatgtgggccgagaattat |
40783216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 40783895 - 40783776
Alignment:
| Q |
1 |
actatgttttagatcctttgcttccaaaacaaacttccatacaaatacaattgtgtcaatcaaattgaggggaacatttgtttatctttctttatcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40783895 |
actatgttttagatcctttgcttccaaaacaaacttccatacaaatacaattgtgtcaatcaaattgaggggaacatttgtttaactttctttatcaact |
40783796 |
T |
|
| Q |
101 |
tcctaatctggacgtcgtgt |
120 |
Q |
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| T |
40783795 |
tcctaatctggacgtcgtgt |
40783776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 51169642 - 51169683
Alignment:
| Q |
429 |
tctcttcttatcacatcatcaatctatcgcatctattacatc |
470 |
Q |
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| T |
51169642 |
tctcttcttatcacatcatcaatttatcacatctattacatc |
51169683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 428 - 464
Target Start/End: Complemental strand, 42147164 - 42147128
Alignment:
| Q |
428 |
ctctcttcttatcacatcatcaatctatcgcatctat |
464 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
42147164 |
ctctcttcttatcacatcatcaatctattacatctat |
42147128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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