View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20536_low_3 (Length: 433)
Name: NF20536_low_3
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 913681 - 914086
Alignment:
| Q |
14 |
aagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgttttgtccaatctaaagttcatgttattcgcatttatctcaccgtg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
913681 |
aagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgttttgtccaatctgaagttcatgttattcgcatttatctcaccgtg |
913780 |
T |
|
| Q |
114 |
cgttgatatgtgtatttaagaaactacatataataattttatttcaaaaatcgtgtatttaagttcataaaggtacaattgctcttttcaatccaaaatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
913781 |
cgttgatatgtgtatttaagaaactacatataataattttatttcaaaaatcgtgtatttaagttcataaaggtacaattgctcttttcaatccaaaatt |
913880 |
T |
|
| Q |
214 |
ttcagttttctttaacatgtaccttagattacaagttagcaagactcaaaaataaattagcactttctcttcattaatatctctttcatttccatgtgaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
913881 |
ttcagttttctttaacatgtaccttagattacaagttagcaagactcaaaaataaattagcactttctcttcattaatatctctttcatttccttgtgaa |
913980 |
T |
|
| Q |
314 |
tcaagcaataaaagagttattttctcttctattgaaagaaataagatttggatgtgtgtggagaattttcaattttgcattgattcaacataaaagagta |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
913981 |
tcaagcaataaaagagttattttctcttctattgaaagaaataagatttggatgtgtgtggagaattttcaattttgcattgattcaacataaaagagta |
914080 |
T |
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| Q |
414 |
actttt |
419 |
Q |
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|||||| |
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| T |
914081 |
actttt |
914086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 129 - 419
Target Start/End: Complemental strand, 890503 - 890211
Alignment:
| Q |
129 |
ttaagaaactacatataataattttatttcaaaaatcgtgtatttaagttcataaaggtacaattgctcttttcaatccaaaattttcagtt-----ttc |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
890503 |
ttaagaaactacatataataattttatttcaaaaatcgtgtatttaagttcataaaggtacaattgctctttttaatccaaaattttcagttttgagttc |
890404 |
T |
|
| Q |
224 |
tttaacatgtaccttagattacaagttagcaagactcaaaaataaattagcactttctcttcattaatatctctttcatttccatgtgaatcaagcaata |
323 |
Q |
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|||||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||| || | |
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| T |
890403 |
tttaacatataacttagattacaagttagcaagactaaaaaataaattagcattttctcttcattaatatctctttcatttcctagcgaat-----aaga |
890309 |
T |
|
| Q |
324 |
aaagagttattttctcttctattgaaagaaataagatttggatgtg--tgtggagaattttcaattttgcattgattcaacataaaagagtaactttt |
419 |
Q |
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| T |
890308 |
aaagagttattttctcttctattgaaagaaataagatttggatgtgtttgtggaaaattttcaattttgcattgattcaacaaaaaagagtaactttt |
890211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 888735 - 888681
Alignment:
| Q |
14 |
aagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
68 |
Q |
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| T |
888735 |
aagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
888681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 1002634 - 1002690
Alignment:
| Q |
11 |
tgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
68 |
Q |
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||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
1002634 |
tgaaaataaatctgtgaaatgaggatcctgagaaggt-aaatgtttggaaattcttgt |
1002690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 888811 - 888764
Alignment:
| Q |
72 |
gtccaatctaaagttcatgttattcgcatttatctcaccgtgcgttga |
119 |
Q |
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||||||||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
888811 |
gtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttga |
888764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 913605 - 913652
Alignment:
| Q |
72 |
gtccaatctaaagttcatgttattcgcatttatctcaccgtgcgttga |
119 |
Q |
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||||||||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
913605 |
gtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttga |
913652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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