View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20536_low_4 (Length: 352)
Name: NF20536_low_4
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 28183924 - 28183592
Alignment:
| Q |
1 |
acatcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaa |
100 |
Q |
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| T |
28183924 |
acatcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaa |
28183825 |
T |
|
| Q |
101 |
gtggaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgat |
200 |
Q |
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| T |
28183824 |
gtggaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgat |
28183725 |
T |
|
| Q |
201 |
atcgccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaacggcgctcct |
300 |
Q |
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| T |
28183724 |
atcgccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaacggcgctcct |
28183625 |
T |
|
| Q |
301 |
cttccaatttgttaatttgctcaatctgtttct |
333 |
Q |
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| T |
28183624 |
cttccaatttgttaatttactcaatctgtttct |
28183592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 40945498 - 40945809
Alignment:
| Q |
4 |
tcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtg |
103 |
Q |
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| T |
40945498 |
tcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaa |
40945597 |
T |
|
| Q |
104 |
gaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgatatc |
203 |
Q |
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| T |
40945598 |
caattccaaacaagatcaatggatgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttactaactggagaaaatgtcatttc |
40945697 |
T |
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| Q |
204 |
gccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaacggcgctcctctt |
303 |
Q |
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| T |
40945698 |
acccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaacggtgctcctctt |
40945797 |
T |
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| Q |
304 |
ccaatttgttaa |
315 |
Q |
| |
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|||||||||||| |
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| T |
40945798 |
ccaatttgttaa |
40945809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 40959463 - 40959774
Alignment:
| Q |
4 |
tcaatcttccaaaagattgcaacatttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtg |
103 |
Q |
| |
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| T |
40959463 |
tcaatctttcaaaagattgcaacttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaa |
40959562 |
T |
|
| Q |
104 |
gaatttcaaacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttgggaacagcgttgctaaccggtgaaaaagtgatatc |
203 |
Q |
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|||| |||||||||| || | ||| || ||||||||| | ||||||||||||||||||||||||||||| | || ||||| || ||||| || || || |
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| T |
40959563 |
caattccaaacaagatcaatggatgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttactaactggagaaaatgtcatttc |
40959662 |
T |
|
| Q |
204 |
gccaggagaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaacggcgctcctctt |
303 |
Q |
| |
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| T |
40959663 |
acccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaacggtgctcctctt |
40959762 |
T |
|
| Q |
304 |
ccaatttgttaa |
315 |
Q |
| |
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|||||||||||| |
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| T |
40959763 |
ccaatttgttaa |
40959774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 43217269 - 43217396
Alignment:
| Q |
28 |
tttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatgaaaatggacaaagtggaatttcaaacaagattaaggaat |
127 |
Q |
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|||||||||||||||||| || | ||||||||||||||||||||||||||| |||| ||| || ||| | || |||| |||||| |||||||||| |
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| T |
43217269 |
tttgaggatgaattgaagtctcttttgccaaaggaagttgaaagtgcaagggttgcatttgagaagggaaattctgaaattccaaacagaattaaggaat |
43217368 |
T |
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| Q |
128 |
gtaggtcttatccattgtacaagtttgt |
155 |
Q |
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| T |
43217369 |
gtaggtcatacccactatacaagtttgt |
43217396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 40550326 - 40550384
Alignment:
| Q |
112 |
aacaagattaaggaatgtaggtcttatccattgtacaagtttgttagagaggagttggg |
170 |
Q |
| |
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||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
40550326 |
aacaaaatcaaggaatgcaggtcttatccattgtataagtttgttagagaggaattggg |
40550384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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