View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20536_low_5 (Length: 347)
Name: NF20536_low_5
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 37058455 - 37058752
Alignment:
| Q |
31 |
cacagacaaagaagccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
130 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058455 |
cacagacaaagaagccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
37058554 |
T |
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| Q |
131 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058555 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
37058654 |
T |
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| Q |
231 |
acatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttgagagttctaaat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37058655 |
acatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctctataatttgagagttctaaat |
37058752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 37065933 - 37066230
Alignment:
| Q |
31 |
cacagacaaagaagccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
130 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37065933 |
cacagacaaagaagccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctccttgc |
37066032 |
T |
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| Q |
131 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37066033 |
aattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatataggta |
37066132 |
T |
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| Q |
231 |
acatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttgagagttctaaat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37066133 |
acatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctctataatttgagagttctaaat |
37066230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 41908570 - 41908628
Alignment:
| Q |
258 |
tgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttg |
316 |
Q |
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||||||||||| | ||||||||||||||||| | |||||||||||| ||||||||||| |
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| T |
41908570 |
tgcaggataacaaactcacaggattcattcctaaccaaattaccaatttatataatttg |
41908628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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