View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20536_low_6 (Length: 332)
Name: NF20536_low_6
Description: NF20536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20536_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 44763583 - 44763270
Alignment:
| Q |
1 |
ccaaaagtagaagcactagtaccacattgaaatgcatcctattcattttgtccaaccaaagtgtagtttcctttataacaagacaataacctaaaaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44763583 |
ccaaaagtagaagcactagtaccacattgaaatgcatcctattcattttgtccaaccaaagtgtagtttcctttataacaagacaataacctaaaaagaa |
44763484 |
T |
|
| Q |
101 |
tgatgaattaatgaagcaacgttaataaatgaagaagggaatttatgtagtgcaaattagggtggcttgcatttgaagtaaatatgaatgaatttatgga |
200 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44763483 |
tggtgaattaatgaagcaaggttaataaatgaagaagggaatttatgtagtgcaaattagggtggcttgcatttgaagtaaatatgaatgaatttatgga |
44763384 |
T |
|
| Q |
201 |
aatggtaccaagtaagatagcattaatgaagaagaacaaggtgcggaaaaatgggggaggagagtaaatgcaggatcatgtgctttaagatttggctgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44763383 |
aatggtaccaagtaagatagcattaatgaagaagaacaaggtgcggaaaaatgggggaggagagtaaatgcaggatcatgtgctttaagatttggctgtt |
44763284 |
T |
|
| Q |
301 |
ggggagtgatattt |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44763283 |
ggggagtgatattt |
44763270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University