View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20537_high_11 (Length: 319)
Name: NF20537_high_11
Description: NF20537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20537_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 1756005 - 1755719
Alignment:
| Q |
11 |
cacagaagaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctagatttcatttaccataggcctcattgcttctt |
110 |
Q |
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| T |
1756005 |
cacagaagaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctaaatttcatttaccataggcctcattgcttctt |
1755906 |
T |
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| Q |
111 |
acatctctgaagcagcgattcaagca------agatggtcgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaa |
204 |
Q |
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| T |
1755905 |
acatctctgaagcagcgattcaagcagagacaagatggccgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaa |
1755806 |
T |
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| Q |
205 |
agtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttact |
291 |
Q |
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| T |
1755805 |
agtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacaagttaggagaaaattcaagggagttact |
1755719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 18704553 - 18704646
Alignment:
| Q |
135 |
caagatggtcgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
228 |
Q |
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| T |
18704553 |
caagatggccgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
18704646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 18705247 - 18705311
Alignment:
| Q |
227 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttact |
291 |
Q |
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| T |
18705247 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttact |
18705311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 18703727 - 18703767
Alignment:
| Q |
96 |
gcctcattgcttcttacatctctgaagcagcgattcaagca |
136 |
Q |
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| T |
18703727 |
gcctcattgcttcttacatatctgaagcagcgattcaagca |
18703767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 6133730 - 6133813
Alignment:
| Q |
11 |
cacagaagaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctagatttcatttaccata |
94 |
Q |
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| T |
6133730 |
cacagaagaaattagaagaaacatagtattgataaaattgagctactattaagaatgttgtaaatctaaatttcatttaccata |
6133813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 35545581 - 35545622
Alignment:
| Q |
234 |
ctggcgcaggccaaagggtattgattcacgagttaggagaaa |
275 |
Q |
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| T |
35545581 |
ctggcgcagaccaaagggtattgattcacgtgtgaggagaaa |
35545622 |
T |
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