View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20537_high_12 (Length: 315)
Name: NF20537_high_12
Description: NF20537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20537_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 14812357 - 14812605
Alignment:
| Q |
58 |
cttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
157 |
Q |
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| T |
14812357 |
cttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
14812456 |
T |
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| Q |
158 |
ttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14812457 |
ttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttggaaggtgctttttatagtacttatggaacaaat |
14812556 |
T |
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| Q |
258 |
ctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812557 |
ctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
14812605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 15259352 - 15259600
Alignment:
| Q |
58 |
cttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259352 |
cttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
15259451 |
T |
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| Q |
158 |
ttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaat |
257 |
Q |
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| T |
15259452 |
ttgagtttaacagcgagatttctctctatatcttcagatattgtttttccaaacaaaagcctctttgtaaggtgctttttatagtacttatggaacaaat |
15259551 |
T |
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| Q |
258 |
ctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259552 |
ctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
15259600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 14804940 - 14805009
Alignment:
| Q |
61 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
130 |
Q |
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| T |
14804940 |
agcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
14805009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 15251934 - 15252003
Alignment:
| Q |
61 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
130 |
Q |
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| T |
15251934 |
agcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
15252003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 14812345 - 14812382
Alignment:
| Q |
23 |
atcatcacctagcttagcgtggcttctataaaagcctt |
60 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
14812345 |
atcatcgcctagcttagcgtggcttctataaaagcctt |
14812382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 15259340 - 15259377
Alignment:
| Q |
23 |
atcatcacctagcttagcgtggcttctataaaagcctt |
60 |
Q |
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| T |
15259340 |
atcatctccttgcttagcgtggcttctataaaagcctt |
15259377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 61 - 306
Target Start/End: Complemental strand, 17521820 - 17521575
Alignment:
| Q |
61 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521820 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
17521721 |
T |
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| Q |
161 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctt |
260 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521720 |
agtttaacagcgagatttctctctatatcttcagatattgttttgccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctt |
17521621 |
T |
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| Q |
261 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17521620 |
tatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
17521575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 17521835 - 17521798
Alignment:
| Q |
23 |
atcatcacctagcttagcgtggcttctataaaagcctt |
60 |
Q |
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|||||||||| ||| ||||||||||||||||||||||| |
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| T |
17521835 |
atcatcacctcgctcagcgtggcttctataaaagcctt |
17521798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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