View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20537_high_5 (Length: 344)
Name: NF20537_high_5
Description: NF20537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20537_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 52003616 - 52003353
Alignment:
| Q |
29 |
agatttcatggaggaattaatggctctaagaagagaaacatatgaaattaccaatccaagtcaagaagaaaatcaattcttctcatcaacaagtaacttg |
128 |
Q |
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| T |
52003616 |
agatttcatggaggaattaatggctctaagaagagaaacatatgaaattaccaatccaagtcaagaagaaaatcaattcttctcatcaacaagtaacttg |
52003517 |
T |
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| Q |
129 |
agttttgataactgttttgatcaaaactctttaccatatctaccaaactcttcttgcactcaacaagttcctcaaagctataacaacaatgatcactaca |
228 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52003516 |
agttttgataactgttttgaacaaaactctttaccatatctaccaaactcttcttgtactcaacaagttcctcaaagctataacaacaatgatcactaca |
52003417 |
T |
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| Q |
229 |
gtaacactttcaatgaaatctatggttccttacttgatgaatcttcaacaccaccacaggttct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52003416 |
gtaacactttcaatgaaatctatggttccttacttgatgaatcttcaacaccaccacagattct |
52003353 |
T |
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