View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20537_high_8 (Length: 337)
Name: NF20537_high_8
Description: NF20537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20537_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 37058453 - 37058752
Alignment:
| Q |
9 |
accacagacaaagaagccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctcctt |
108 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058453 |
accacagacaaagaagccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctcctt |
37058552 |
T |
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| Q |
109 |
gcaattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactcccaggtaacttaagcccttatatagg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37058553 |
gcaattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatatagg |
37058652 |
T |
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| Q |
209 |
taacatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttgagagttctaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37058653 |
taacatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctctataatttgagagttctaaat |
37058752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 37065931 - 37066230
Alignment:
| Q |
9 |
accacagacaaagaagccttaatctcattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctcctt |
108 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37065931 |
accacagacaaagaagccttaatcttattaaaatctcagttaagcaataataacacttctcctcccccattatcctcttggatccataattcatctcctt |
37066030 |
T |
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| Q |
109 |
gcaattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactcccaggtaacttaagcccttatatagg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37066031 |
gcaattggactggtgtcctatgtgacaagcataaccaaagagtgactagcttggacctttcaggcttcggactctcaggtaacttaagcccttatatagg |
37066130 |
T |
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| Q |
209 |
taacatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttgagagttctaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37066131 |
taacatgtcctctcttcagtcccttcaattgcaggataaccagttcacaggattcattcctgagcaaattaccaatctctataatttgagagttctaaat |
37066230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 41908570 - 41908628
Alignment:
| Q |
238 |
tgcaggataaccagttcacaggattcattcctgagcaaattaccaatctatataatttg |
296 |
Q |
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||||||||||| | ||||||||||||||||| | |||||||||||| ||||||||||| |
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| T |
41908570 |
tgcaggataacaaactcacaggattcattcctaaccaaattaccaatttatataatttg |
41908628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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