View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20538_high_1 (Length: 543)
Name: NF20538_high_1
Description: NF20538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20538_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 1353901 - 1353386
Alignment:
| Q |
8 |
tgagatgaaggg-tggttacattaaaatcgacttatgagacgcgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaa |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1353901 |
tgagatgaagggatggttacattaaaatcgacttatgagacgcgcataggaagcctctggtgatccgtccgcttaaatgctatacagtagtgaagatcaa |
1353802 |
T |
|
| Q |
107 |
aagcttattcagtttataacagacaaacatgaatagctttagttacttaaagttgctannnnnnncgtatttttcaatatgatcttagtgtgcgtggatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1353801 |
aagcttattcagtttataacagacaaacatgaatagctttagttacttaaagttgctatttttttcgtatttttcaatatgatcttagtgtgcgtggatt |
1353702 |
T |
|
| Q |
207 |
gaatgtaaatgcaaaggacattattattaaacaaccgtttctgataccgattcaatttataactatatgttattatgaagggcagcatatacaagattta |
306 |
Q |
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| T |
1353701 |
gaatgtaaatgcaaaggacattattattaaacaaccgtttctgataccgattcaatttataactatatgttatcatgaagggcagcatatacaagattta |
1353602 |
T |
|
| Q |
307 |
tacaagattcaaaggacaccctaaatttagagaaattaacataacaatgatcagcatatacaatgatcatcggatgaatgaaatgtgtcgtgtatcacct |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
1353601 |
tacaagattcaaaggacaccctaaatttagagaaattaacataacaatgatcagcatatacaatgatcatcgggtgaatgaaatgtgccgtgtatcacct |
1353502 |
T |
|
| Q |
407 |
cagatgattttccttcaattattcgagctattgcataacatgcgagaacatacaatgtttttaacagcagacgtcacctcacatagcctagtgatgttta |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
1353501 |
cagatgattttccttcaattattcgagctattgcataacatgtgagaacatacaatggttttaacagcagacgtcacctcacatagcttagtggtgttta |
1353402 |
T |
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| Q |
507 |
tcctaacagatttctc |
522 |
Q |
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|||||||||||||||| |
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| T |
1353401 |
tcctaacagatttctc |
1353386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 1343722 - 1343642
Alignment:
| Q |
383 |
aatgaaatgtgtcgtgtatcacctcagatgattttccttcaattattcgagctattgcataacatgcgagaacatacaatg |
463 |
Q |
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|||||||| ||||| ||||| ||||||||||||||||||||||||||| || |||||||| ||||| |||| ||||||||| |
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| T |
1343722 |
aatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatg |
1343642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 1355865 - 1355945
Alignment:
| Q |
383 |
aatgaaatgtgtcgtgtatcacctcagatgattttccttcaattattcgagctattgcataacatgcgagaacatacaatg |
463 |
Q |
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| T |
1355865 |
aatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatg |
1355945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 1339296 - 1339157
Alignment:
| Q |
23 |
ttacattaaaatcgacttatgagacgcgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaaaagcttattcagttta |
122 |
Q |
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||||||| ||||| | |||||| | ||||||| ||||| ||||||||| || |||| || ||||| |||||| |||||||||||||| ||||| ||| |
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| T |
1339296 |
ttacattgaaatccatgtatgaggcacgcatagaaagccattggtgatccatcagcttgaaagctatgcagtagagaagatcaaaagctgattcattttc |
1339197 |
T |
|
| Q |
123 |
taacagacaaacatgaatagctttagttacttaaagttgc |
162 |
Q |
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| T |
1339196 |
tgccagacaaacatgaatagatttagttattgaaagttgc |
1339157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 1354755 - 1354820
Alignment:
| Q |
239 |
aaccgtttctgataccgattcaatttataactatatgttattatgaagggcagcatatacaagatt |
304 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||| ||||| | ||||||||| |||||| |
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| T |
1354755 |
aaccgcttctgataccgattcaatttgtaactatatgttatcatgaatgccagcatatataagatt |
1354820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 1344807 - 1344743
Alignment:
| Q |
239 |
aaccgtttctgataccgattcaatttataactatatgttattatgaagggcagcatatacaagatt |
304 |
Q |
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| T |
1344807 |
aaccttttctgatactgattcaatttata-ctatatgttatcatgaatgccagcatatataagatt |
1344743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 1344859 - 1344817
Alignment:
| Q |
105 |
aaaagcttattcagtttataacagacaaacatgaatagcttta |
147 |
Q |
| |
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||||||||||||||||| |||| ||||||| |||||||||||| |
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| T |
1344859 |
aaaagcttattcagtttctaactgacaaacctgaatagcttta |
1344817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 29051610 - 29051735
Alignment:
| Q |
23 |
ttacattaaaatcgacttatgagacgcgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaaaagcttattcagttta |
122 |
Q |
| |
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|||||||||||||||| |||||| | |||||| ||||| ||||||||| || ||||||| ||||| ||||| ||||||| |||||||||||||||| |
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| T |
29051610 |
ttacattaaaatcgacgtatgaggcatgcatagaaagccattggtgatccatcagcttaaaagctatgtagtagagaagatcgaaagcttattcagtttc |
29051709 |
T |
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| Q |
123 |
taacagacaaacatgaatagctttagtt |
150 |
Q |
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||||| |||||||||| ||||||||| |
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| T |
29051710 |
aaacag--aaacatgaattgctttagtt |
29051735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 29051747 - 29051807
Alignment:
| Q |
244 |
tttctgataccgattcaatttataactatatgttattatgaagggcagcatatacaagatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||| |
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|
| T |
29051747 |
tttctgataccgattcaatttataactatatgttatcatgaacgccagcatatataagatt |
29051807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 24618141 - 24618061
Alignment:
| Q |
383 |
aatgaaatgtgtcgtgtatcacctcagatgattttccttcaattattcgagctattgcataacatgcgagaacatacaatg |
463 |
Q |
| |
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|||||||| ||||||||||| |||| ||||| ||||||| ||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
24618141 |
aatgaaatatgtcgtgtatctcctccgatgaccttccttcgattattcgagctattgcatgacatgtgagatcatacaatg |
24618061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 13591432 - 13591320
Alignment:
| Q |
49 |
cgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaaaagcttattcagtttataacagacaaacatgaatagctttag |
148 |
Q |
| |
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||||||| ||||| ||||||| | || |||| |||||||| |||||| ||| |||||||| | ||||| ||| | ||||||| |||||||||||||| |
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| T |
13591432 |
cgcatagaaagccattggtgattcatcagcttgaatgctatgcagtagagaacatcaaaagttgattcattttctgt-agacaaaaatgaatagctttag |
13591334 |
T |
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| Q |
149 |
ttacttaaagttgc |
162 |
Q |
| |
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||||| |||||||| |
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| T |
13591333 |
ttactaaaagttgc |
13591320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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