View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20538_high_5 (Length: 236)
Name: NF20538_high_5
Description: NF20538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20538_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 45542072 - 45542183
Alignment:
| Q |
34 |
agcaaataaaacgtatcttatttagctgcccacataaaacaatgtacaagttttgaagagaggattttatatataatannnnnnnatcacaaaaaaggac |
133 |
Q |
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| T |
45542072 |
agcaactaaaacgtatcttatttagctgcccacaaaaaacaatg-acaagttttgaagagaagattttatatataatattttgttatcacaaaaaaggac |
45542170 |
T |
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| Q |
134 |
ataagatgaaata |
146 |
Q |
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| T |
45542171 |
ataagatgaaata |
45542183 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 45542713 - 45542782
Alignment:
| Q |
167 |
tacgtgtttgtttttaccactgaacagaaaagtcagtaggaggtaatgtgaagcaaccattgtggcggtt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45542713 |
tacgtgtttgtttttaccactgaacagaaaagtcagtaggaggtaatgtgaagcaaccattgtggcggtt |
45542782 |
T |
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