View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20538_low_2 (Length: 339)
Name: NF20538_low_2
Description: NF20538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20538_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 1141918 - 1141604
Alignment:
| Q |
18 |
gaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggaggaggaataggcagaggaataggcagaggagtgggtggtggaattatcggtg |
117 |
Q |
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| T |
1141918 |
gaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggaggaggaataggcagaggaataggcagaggagtgggtggtggagttatcggtg |
1141819 |
T |
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| Q |
118 |
ctggagttatcggcggatcaaccacctatgacaggagtcatcactccaatagttctgcatcatcattatctgcagggccttacgtttgtgtctcaacatt |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1141818 |
ctggagttatcggcgggtcaaccacctatgacaggagtcatcactccaatagttctgcatcatcattatctgcagggccttatgtttgtgtctcaacatt |
1141719 |
T |
|
| Q |
218 |
gattttgtgtttgagcttttggttataatcatattgtttcacttccactagtttagtatcatgttatgtagtttttgtataggcctacaattaaaaacat |
317 |
Q |
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| T |
1141718 |
tattttatgtttgagcttttggttataatcatattgtttcacttccactagtttagtatcgtgttatgtagcttttgtataggcctagcattaaaaacat |
1141619 |
T |
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| Q |
318 |
gtttgcttgtctctg |
332 |
Q |
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||||||||||||||| |
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| T |
1141618 |
gtttgcttgtctctg |
1141604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 306
Target Start/End: Complemental strand, 1137183 - 1136976
Alignment:
| Q |
99 |
ggtggtggaattatcggtgctggagttatcggcggatcaaccacctatgacaggagtcatcactccaatagttctgcatcatcattatctgcagggcctt |
198 |
Q |
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| T |
1137183 |
ggtgctggaattatcggtgctggagttattggcgggtcaaccgcctatcacgggagtcatcgctccaatagttctgcaccatcattatctgcagggcctt |
1137084 |
T |
|
| Q |
199 |
acgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagtttagtatcatgttatgtagtttttgtata |
298 |
Q |
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| T |
1137083 |
atgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagtttagtatcatgttatgtagcttttgtata |
1136984 |
T |
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| Q |
299 |
ggcctaca |
306 |
Q |
| |
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|||||||| |
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| T |
1136983 |
ggcctaca |
1136976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 1137318 - 1137266
Alignment:
| Q |
18 |
gaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggaggagg |
70 |
Q |
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| T |
1137318 |
gaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggaggagg |
1137266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 1181336 - 1181267
Alignment:
| Q |
170 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttgg |
239 |
Q |
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||||||| || ||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||| |
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| T |
1181336 |
ttctgcaacaacattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttgagcttttgg |
1181267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 1133551 - 1133436
Alignment:
| Q |
170 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagt |
269 |
Q |
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||||||| ||||||| | ||||||| |||| ||||| |||||||||| ||||| ||| | | ||||||| | |||| | |||||||||||||| |||| |
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| T |
1133551 |
ttctgcagcatcattttatgcagggacttatttttgtttctcaacatttattttatgtgtaatcttttggctttaattaccttgtttcacttccagtagt |
1133452 |
T |
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| Q |
270 |
ttagtatcatgttatg |
285 |
Q |
| |
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| |||||||||||||| |
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| T |
1133451 |
taagtatcatgttatg |
1133436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 1172088 - 1171978
Alignment:
| Q |
170 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcata-ttgtttcacttccactag |
268 |
Q |
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||||||| || ||||||||||| ||||| | || ||||||| |||||||||||||||||||| |||||| | ||| || | |||||||||||| | ||| |
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| T |
1172088 |
ttctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagtttttggctttaaacacatttgtttcacttctagtag |
1171989 |
T |
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| Q |
269 |
tttagtatcat |
279 |
Q |
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|||||| |||| |
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| T |
1171988 |
tttagtttcat |
1171978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 1148533 - 1148464
Alignment:
| Q |
170 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttgg |
239 |
Q |
| |
|
||||||| || |||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||||| |
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| T |
1148533 |
ttctgcaacaacattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttgg |
1148464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 1160120 - 1160039
Alignment:
| Q |
201 |
gtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagtttagtatcatgtt |
282 |
Q |
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| T |
1160120 |
gtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccactaattaagtatcatgtt |
1160039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 1164700 - 1164600
Alignment:
| Q |
170 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagt |
269 |
Q |
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|||||||||| ||||||| | ||||||| | ||||||| |||||||||||||| ||| ||||||||||| | || || || ||||||||||||| ||| |
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| T |
1164700 |
ttctgcatcaacattatcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagt |
1164601 |
T |
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| Q |
270 |
t |
270 |
Q |
| |
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| |
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| T |
1164600 |
t |
1164600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 1160354 - 1160307
Alignment:
| Q |
24 |
aatgaacacaaacatgaactatctgttaccataagaaaaggaggagga |
71 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
1160354 |
aatgcacacaaacatgaactatctgttactataagaaagggaggagga |
1160307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 1133740 - 1133696
Alignment:
| Q |
23 |
taatgaacacaaacatgaactatctgttaccataagaaaaggagg |
67 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
1133740 |
taatgagcacaaacatgaactatctgttactgtaagaaaaggagg |
1133696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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