View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20538_low_3 (Length: 321)
Name: NF20538_low_3
Description: NF20538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20538_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 4871157 - 4871434
Alignment:
| Q |
16 |
gctaaaaagccaaaacataaaaccacccaaacaacccttaatacaatataatcacaacagaaaaaccttaaccaaatcaagaaaaaacacccagactttc |
115 |
Q |
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|||||||| ||| | || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||| |
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| T |
4871157 |
gctaaaaatccacatcacaaaaccacccaaacaacccttaatacaatataatcacagcagaaaaaccttaaccaaatcaagcaaacacacccagaccttc |
4871256 |
T |
|
| Q |
116 |
ccctaacacaaaatcaaaccagttgccatcaacaccacatcaatagacccccctaaataattgaaccaaaaccagccacctaaacttcctggtacaagta |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
4871257 |
ccctaacacaaaatcaaaccagtttccatcaacaccacatcaataga-ccccttaaataattgaacaaaaaccagccacctaaacttcctggtaccagta |
4871355 |
T |
|
| Q |
216 |
aattacaattacttagtaaatattgatatgtcttgttgcattcatgtttcagaaatgtgtggctggagggcaatctttg |
294 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4871356 |
aattacaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaatctttg |
4871434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 4845515 - 4845675
Alignment:
| Q |
132 |
aaccagttgccatcaacaccacatcaatagacccccctaaataattgaaccaaaaccagccacctaaacttcctggtacaagtaaattacaattacttag |
231 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4845515 |
aaccagtttccatcaacaccacatcaatagacccc--taaataattgaacaaaaaccagccacctaaacttcctggtaccagtaaattacaattacttag |
4845612 |
T |
|
| Q |
232 |
taaatattgatatgtcttgttgcattcatgtttcagaaatgtgtggctggagggcaatctttg |
294 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
4845613 |
tagatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggtaatctttg |
4845675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 4834826 - 4834911
Alignment:
| Q |
11 |
caaaggctaaaaagccaaaacataaaaccacccaaacaacccttaatacaatataatcacaacagaaaaaccttaaccaaatcaag |
96 |
Q |
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||||||| ||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
4834826 |
caaaggccaaaaagccacaacacaaaaccacccaaacaacccttaatacaatagaatcacagcagaaaaaccttaaccaaatcaag |
4834911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 4826196 - 4826283
Alignment:
| Q |
220 |
acaattacttagtaaatattgatatgtcttgttgcattcatgtttcagaaatgtgtggctggagggcaatctttgcttcggtccttcc |
307 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||||| |
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| T |
4826196 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtgggtggagggcaatttttgtatcggtacttcc |
4826283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 4841567 - 4841636
Alignment:
| Q |
35 |
aaaccacccaaacaacccttaatacaatataatcacaacagaaaaaccttaaccaaatcaagaaaaaaca |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
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| T |
4841567 |
aaaccacctaaacaacccttaatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaaaaca |
4841636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 4826141 - 4826191
Alignment:
| Q |
13 |
aaggctaaaaagccaaaacataaaaccacccaaacaacccttaatacaata |
63 |
Q |
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|
||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
4826141 |
aaggctaaaaagccacaacataaaaccaccaaaacaacccttaatacaata |
4826191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 4845461 - 4845512
Alignment:
| Q |
16 |
gctaaaaagccaaaacataaaaccacccaaacaacccttaatacaatataat |
67 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||||||||||| |
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|
| T |
4845461 |
gctaaaaagccacatcacaaaaccacccaaacaacccttaatacaatataat |
4845512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 4860465 - 4860510
Alignment:
| Q |
34 |
aaaaccacccaaacaacccttaatacaatataatcacaacagaaaa |
79 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| ||||||| |
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| T |
4860465 |
aaaaccgcccaaacaacccttaatacaatagaatcacagcagaaaa |
4860510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 4880472 - 4880517
Alignment:
| Q |
34 |
aaaaccacccaaacaacccttaatacaatataatcacaacagaaaa |
79 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| ||||||| |
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| T |
4880472 |
aaaaccgcccaaacaacccttaatacaatagaatcacagcagaaaa |
4880517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 4852184 - 4852231
Alignment:
| Q |
35 |
aaaccacccaaacaacccttaatacaatataatcacaacagaaaaacc |
82 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||| |||||||||| |
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| T |
4852184 |
aaaccacccaaacaatccttaatacaatagaataacatcagaaaaacc |
4852231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 4856155 - 4856202
Alignment:
| Q |
35 |
aaaccacccaaacaacccttaatacaatataatcacaacagaaaaacc |
82 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| |||||||||| |
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| T |
4856155 |
aaaccacccaaacaatccttaatacaatagaataacatcagaaaaacc |
4856202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 4877890 - 4877937
Alignment:
| Q |
35 |
aaaccacccaaacaacccttaatacaatataatcacaacagaaaaacc |
82 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| |||||||||| |
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| T |
4877890 |
aaaccacccaaacaatccttaatacaatagaataacatcagaaaaacc |
4877937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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