View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20538_low_4 (Length: 302)
Name: NF20538_low_4
Description: NF20538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20538_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 194193 - 193927
Alignment:
| Q |
20 |
ctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttcttctaaatctctagcttttctcatctctttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
194193 |
ctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttcttctaaatctctagcttttctcatctctttg |
194094 |
T |
|
| Q |
120 |
ccccagcttttctggtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaatagagggttcacgtgtccttgcgccgggaac |
219 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
194093 |
ccccagc-tttctagtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaatagagggttcacgtgtccttgcgccgggaac |
193995 |
T |
|
| Q |
220 |
gatacaacatacaaggaacacatgctctacaatatcattatcacaccccatttttcctttaatctcattcatctc |
294 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
193994 |
g-------atacaaggaacacatgctctacaatatcattatcacaccccattttccctttaatctcattcatctc |
193927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University