View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_1 (Length: 810)
Name: NF20539_high_1
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 328 - 794
Target Start/End: Complemental strand, 1647415 - 1646935
Alignment:
| Q |
328 |
cattgaattaatgggaaattgagcgagatactgaccgttataacaacaccgccaccattcttttggcctaaagtgagaccaagtggcttgtcaacctcag |
427 |
Q |
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| T |
1647415 |
cattgaattaatgggaaattgagcgagatactgaccgttataacaacaccgccaccattcttttggcctaaagtgagaccaagtggcttgtcaacctcag |
1647316 |
T |
|
| Q |
428 |
cttcaattgtctttgaagcaccagcagctcttgcggtgatctcaagtctctttctagcaatggaggaggaacaacttttgttgtcacctaggaaggatcc |
527 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
1647315 |
cttcaattgtctttgaagcaccagcagttcttgcagtgatctcaagtctctttctagcaatggaggaggaaccacttttgttgtcacctaggaacgatcc |
1647216 |
T |
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| Q |
528 |
tgaaacaccccttttggcttcatgaagtgagagccctagcaaagatgttttctgcatatacatacaatag-----ctca--------------atgattt |
608 |
Q |
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| T |
1647215 |
tgaaacaccccttttggcttcatgaagtgagagccctagcaaagatgttttctgcata-acatacaatagcaagactaaaaagcattaaagacatgattt |
1647117 |
T |
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| Q |
609 |
taaattgtatttgtgttgagctcaatgattaatgaacttcaatcaaagattagttgttcgagaaaacccgagttcaaatcctgaccagaacgatatttga |
708 |
Q |
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| T |
1647116 |
taaattgtatttgtgttgagctcaatgattaatgaacttcaatcaaagattaattgttcgagaaaacccgagttcaaatcctgaccagaacgatatttga |
1647017 |
T |
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| Q |
709 |
tcagactttacttacttaccgacgacccaggtaatcatgcaaagaaaagaagagtacctgacatggaggagtgagtgtcttggaag |
794 |
Q |
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| T |
1647016 |
tcagactttacttacttaccga----ccaggtaatcatgcaaagaaaagaagagtacctgacatggaggagtgagtgtcttggaag |
1646935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 282
Target Start/End: Complemental strand, 1647705 - 1647417
Alignment:
| Q |
4 |
catctccaaagaaactgctagtatatagaacttggtcccctgactttaaccctgctcttgctgcattccctccaccttcaacagcctaaagaagataata |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1647705 |
catctccaaagaaactgctagtatatagaacttggtccccggactttaaccctgctcttgctgcattccctccaccttcaacagcctaaagaagataata |
1647606 |
T |
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| Q |
104 |
cgcatcttcattcagaaattgaaattattccctttaaaccagaaagcaccgacacagacaaggatatcagacataggaaacaacactga----------c |
193 |
Q |
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| T |
1647605 |
cgcatcttcattcagaaattgaaattattccctttaaaccaaaaagcaccgacacagacaaggatattagacataggacacaacactgacacatcgacgc |
1647506 |
T |
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| Q |
194 |
aaataatattttgagaacgtgaaatattggaatttaaccatatgtgtcggtgtcgtgtcgcttatgtcggataccagacatgccttcaa |
282 |
Q |
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| T |
1647505 |
aaataatattttgagaacgtgaaatattggaatttaaccatatgtgtcagtgtcgtgtcgcttatgtcggataccagacatgccttcaa |
1647417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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