View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_10 (Length: 603)
Name: NF20539_high_10
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 11 - 586
Target Start/End: Original strand, 9140032 - 9140600
Alignment:
| Q |
11 |
cagagaatatgctttatgaactaataatctgatactttaactttgaacaaatacacatcctcccattcaacggcattgccataagatatttgaaaataaa |
110 |
Q |
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| T |
9140032 |
cagagaatatgctttacgaactaataatctgatactttaactttgaacaaatacacatcctcccattcaacggcattgccataagatatttgaaaataaa |
9140131 |
T |
|
| Q |
111 |
ataaaatataatggtcatgtttaattaatcctaaatttccatgtccaaacaaatggcctatttcagtgtcaaagtgacgcatcaacctatgtaacgacga |
210 |
Q |
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| T |
9140132 |
ataaaatataatggtcatgtttaattaatcctaaatttcaatgtccaaacaaatggcctatttcagtgtcaaagtgacgcatcaacctatgtaacgacga |
9140231 |
T |
|
| Q |
211 |
ctaatcaaagttnnnnnnntgttctataatgtgccggcaacttaagctgatttcattacaatttctttacacttgcactctactatgctagcacgccact |
310 |
Q |
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| T |
9140232 |
ctaatcaaagttaaaaaaatgttttataatgtgccggcaacttaagctgatttcattacaatttctttacacttgcactctactatgctagcacgccact |
9140331 |
T |
|
| Q |
311 |
tctctatcatcaatgtcaaccatattctttctttaattgccccctaagttttaatttgtctcttttaatttcctgattagatgatatctaatcatgaatc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9140332 |
tctctatcatcaatgtcaaccatattctttctttaattgccccctaa-ttttaatttgtctcttttaatttcccgattagatgatatctaatcatgaatc |
9140430 |
T |
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| Q |
411 |
atacctttcagctacctcctaatcctattatgtcccttaaattttaaaccatgctataaatgttagcatagcataacttttcacaatttcatacttcaaa |
510 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9140431 |
atacctttcagctacc------tcctattatgtcccttacattttaaaccatgctataaatgttagcatagcataacttttcacaatttcatacttcaaa |
9140524 |
T |
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| Q |
511 |
accattttcctcagaagaaaatactgcacagcacataaactctagatggagaaactgtttaagattaaaacaacgt |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9140525 |
accattttcctcagaagaaaatactgcacagcacataagctctagatggagaaactgtttaagattaaaacaacgt |
9140600 |
T |
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