View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_11 (Length: 593)
Name: NF20539_high_11
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 338 - 577
Target Start/End: Complemental strand, 4858432 - 4858193
Alignment:
| Q |
338 |
gttaccaatatcatgaataatcaaatttgcttcaataacttcttcaagaacattttcacctttctcttcatcatttttctcttcaccatcnnnnnnnttc |
437 |
Q |
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| T |
4858432 |
gttaccaatatcatgaataatcaaatttgcttcaataacttcttcaagaacattttcacctttctcttcatcatttttctcttcaccatcaaaaaaattc |
4858333 |
T |
|
| Q |
438 |
tctttttcaaaaaacccttcttgtgattccctcaaattccgatacgcttcgcaaacacacttacttccatcatcattctctccacatttacacaaaacag |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4858332 |
tctttttcaaaaaacccttcttgtgattccctcaaattccgatacgcttcacaaacacacttacttccatcatcattctctccacatttacacaaaacag |
4858233 |
T |
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| Q |
538 |
ttttcctaggactttgatcattcttcttcttctttgcaac |
577 |
Q |
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| T |
4858232 |
ttttcctaggactttgatcattcttcttcttctttgcaac |
4858193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 4858608 - 4858487
Alignment:
| Q |
162 |
atactaagtaacctctcaaaagccttcaccaaatgcatcactttcccattttcaggtacactattccttgcttcttccattactttctctcttctccttt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4858608 |
atactaagtaacctctcaaaagccttcaccaaatgcatcactttcccattttcaggtacactattccttgcttcttccattactttctctcttctccttt |
4858509 |
T |
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| Q |
262 |
tcaccattgaactacaattacc |
283 |
Q |
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| T |
4858508 |
tcaccattgaactacaattacc |
4858487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 4858760 - 4858675
Alignment:
| Q |
10 |
catcatcatcacaacaactcgaaacaacttcagattgttcattaccatccttaacaggttgttgaaattgcaatccaggtaatgcc |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4858760 |
catcatcatcacaacaactcgaaacaacttcagattgttcatcaccatccttaacaggttgttgaaattgcaatccaggtaatgcc |
4858675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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