View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_high_14 (Length: 562)

Name: NF20539_high_14
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_high_14
NF20539_high_14
[»] chr7 (3 HSPs)
chr7 (11-547)||(45621378-45621911)
chr7 (64-110)||(45623318-45623364)
chr7 (66-110)||(10209939-10209983)
[»] chr8 (5 HSPs)
chr8 (118-547)||(22603007-22603432)
chr8 (64-145)||(29781131-29781212)
chr8 (65-108)||(510296-510339)
chr8 (64-108)||(23124864-23124908)
chr8 (64-110)||(29642451-29642497)
[»] chr3 (6 HSPs)
chr3 (67-545)||(15214468-15214940)
chr3 (67-545)||(15253687-15254159)
chr3 (238-375)||(7043544-7043681)
chr3 (67-154)||(7043334-7043421)
chr3 (66-110)||(23217929-23217974)
chr3 (64-110)||(18983758-18983805)
[»] chr1 (5 HSPs)
chr1 (168-542)||(20187858-20188234)
chr1 (238-375)||(25613428-25613565)
chr1 (65-145)||(46119661-46119741)
chr1 (66-109)||(22048926-22048969)
chr1 (67-154)||(20187760-20187847)
[»] chr6 (8 HSPs)
chr6 (238-375)||(17722221-17722357)
chr6 (65-110)||(21686116-21686161)
chr6 (67-110)||(17721533-17721576)
chr6 (67-110)||(23158117-23158160)
chr6 (67-109)||(19000466-19000508)
chr6 (65-110)||(18763100-18763145)
chr6 (65-109)||(20879072-20879116)
chr6 (70-110)||(20014729-20014769)
[»] chr2 (4 HSPs)
chr2 (66-145)||(44923846-44923925)
chr2 (67-110)||(23463750-23463793)
chr2 (64-108)||(25423770-25423815)
chr2 (168-204)||(24056879-24056915)
[»] chr4 (4 HSPs)
chr4 (67-110)||(35579453-35579496)
chr4 (65-110)||(50380485-50380530)
chr4 (66-110)||(581741-581785)
chr4 (66-110)||(581434-581478)
[»] chr5 (6 HSPs)
chr5 (67-110)||(19832214-19832257)
chr5 (65-107)||(20670616-20670658)
chr5 (65-110)||(22542955-22543000)
chr5 (67-110)||(21116947-21116991)
chr5 (65-110)||(23196130-23196177)
chr5 (62-109)||(38930986-38931034)
[»] scaffold0164 (2 HSPs)
scaffold0164 (68-110)||(34289-34331)
scaffold0164 (67-110)||(6152-6196)
[»] scaffold0039 (1 HSPs)
scaffold0039 (65-110)||(79969-80015)
[»] scaffold0755 (1 HSPs)
scaffold0755 (67-110)||(4802-4846)
[»] scaffold0305 (1 HSPs)
scaffold0305 (67-110)||(891-935)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Original strand, 45621378 - 45621911
Alignment:
Q  11 cacagatgactaactagtagtaatagtaaatgggtaatcgagataaaatgcagttaatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  45621378 cacagatgactaactagtagtaatagtaacagggtaatcgagataaaacgcagttaatctatacctattaataaaggcagtactattttttgatgtagcc 45621477  T
Q  111 nnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataactactgtg 210  Q
           ||||||||||||||||||||||||||||||| |||||             | ||||||||||||||||||||||||||||||||||||| |||    
T  45621478 tttttttgtacatcccaaaatgcctttacttgatggcaattattaaaaaaaaata--tatgttttacccactaatcacacaccaaaacataactaccgtg 45621575  T
Q  211 tttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnn 310  Q
    ||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||          
T  45621576 tttttctttgaaaaaaatctgacttaaccactaatcacactcacaaaaacataattgctacctt-ctctttctcacagttgcagaaacaatcataaaaaa 45621674  T
Q  311 ncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggcccttcaatgacactgtttgct 410  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  45621675 acaactgcttccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggcccctcaatgacattgtttgct 45621774  T
Q  411 tctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  45621775 tctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcatttattatgatcttgttgctaactcaaatggacatctc 45621874  T
Q  511 ttatattgctaattacagtaatttataagcacatact 547  Q
    |||||||||||||||||||||||||||||||||||||    
T  45621875 ttatattgctaattacagtaatttataagcacatact 45621911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 45623318 - 45623364
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||    
T  45623318 ttaatctatacctattaataaaggcaatactttcttttggtgtagcc 45623364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 10209983 - 10209939
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||| || ||||||| | |||||||||||||    
T  10209983 aatctatacctattaatatagccaatactttcttttggtgtagcc 10209939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 118 - 547
Target Start/End: Original strand, 22603007 - 22603432
Alignment:
Q  118 gtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataactactgtgtttttct 217  Q
    ||||||||||||||||| |||||||||||||||||||             |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  22603007 gtacatcccaaaatgcccttacttgatggcagttattaaaaaaaaa----tctgctttacccactaatcacacaccaaagcataactactgtgtttttct 22603102  T
Q  218 ttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattg 317  Q
    |||       ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||       ||| ||    
T  22603103 ttgaaaaaaatctggcttacctactaatcacactcacaaaaacataattgctacctttctctttctcacagttgcataaacaatcataaaaaaacaactg 22603202  T
Q  318 cttccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggcccttcaatgacactgtttgcttctaact 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  22603203 cttccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggcccctcaatgacaccgtttgcttctaact 22603302  T
Q  418 tctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatatt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22603303 tctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatatt 22603402  T
Q  518 gctaattacagtaatttataagcacatact 547  Q
    ||||||||||| ||||||||||||||||||    
T  22603403 gctaattacagaaatttataagcacatact 22603432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 29781131 - 29781212
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||       ||| ||||||||||||| ||||||||||    
T  29781131 ttaatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttacttgatg 29781212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 510339 - 510296
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtag 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  510339 taatctatacctattaataaaggcaatactattttttggtgtag 510296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 23124908 - 23124864
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtag 108  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  23124908 ttaatctatacctattaataaaggcaatattattttttggtgtag 23124864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 29642497 - 29642451
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||    
T  29642497 ttaatctatacctattaataaagacaatacatgtttttggtgtagcc 29642451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 67 - 545
Target Start/End: Complemental strand, 15214940 - 15214468
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnn 166  Q
    |||| ||||||||||||||| |||||| ||||||||||||| ||       ||| ||||||||||||| |||||||||||||||||||                
T  15214940 atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-- 15214843  T
Q  167 ntctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataatt 266  Q
     |||| |||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||| |||||||||||||||||||| ||||||||    
T  15214842 -tctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataatt 15214744  T
Q  267 gctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttat 366  Q
    ||||||||||||||||||||||| ||||||||||||||       ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15214743 gctacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttat 15214644  T
Q  367 caaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatact 466  Q
     |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||    
T  15214643 taaacaattgttcagagaaaggcccctcaatgacactgtttgcttctaacttctccatcactttttggtatgtcatgtttaaatt---caatggaatact 15214547  T
Q  467 tgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacata 545  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15214546 tgatcctttcttatgatcatgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacata 15214468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 67 - 545
Target Start/End: Complemental strand, 15254159 - 15253687
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnn 166  Q
    |||| ||||||||||||||| |||||| ||||||||||||| ||       ||| ||||||||||||| |||||||||||||||||||                
T  15254159 atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-- 15254062  T
Q  167 ntctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataatt 266  Q
     |||| |||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||| |||||||||||||||||||| ||||||||    
T  15254061 -tctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataatt 15253963  T
Q  267 gctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttat 366  Q
    ||||||||||||||||||||||| ||||||||||||||       ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15253962 gctacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttat 15253863  T
Q  367 caaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatact 466  Q
     |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||    
T  15253862 taaacaattgttcagagaaaggcccctcaatgacactgtttgcttctaacttctccatcactttttggtatgtcatgtttaaatt---caatggaatact 15253766  T
Q  467 tgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacata 545  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15253765 tgatcctttcttatgatcatgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacata 15253687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 7043544 - 7043681
Alignment:
Q  238 ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca 337  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||||    
T  7043544 ccactaatcacactcacaaaatcataactgttgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca 7043643  T
Q  338 attgaatggtttagttctacacaatttatcaaacaatt 375  Q
    |||| |||||||| ||||||||||||||| ||||||||    
T  7043644 attgcatggtttacttctacacaatttattaaacaatt 7043681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 7043334 - 7043421
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttatt 154  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |       ||| ||||||||||| | |||||| |||| |||||||    
T  7043334 atctatacctattaataaaggcaatactatttttgggtgtagtctttttttgtaaatcccaaaatgtccttacttcatggtagttatt 7043421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 23217929 - 23217974
Alignment:
Q  66 aatctatacctattaataaagacaatac-tattttttggtgtagcc 110  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  23217929 aatctatacctattaataaagacaatactttttttttggtgtagcc 23217974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 18983758 - 18983805
Alignment:
Q  64 ttaatctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||    
T  18983758 ttaatctatacctattaataaaggcaatacttttcttttggtgtagcc 18983805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 168 - 542
Target Start/End: Original strand, 20187858 - 20188234
Alignment:
Q  168 tctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattg 267  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||| || |||||||||||||||||||||||||||    
T  20187858 tctgctttacccactaatcacacaccaaaacataactgctgtgtttttctttgaaaaaaatctggcttaccccctaatcacactcacaaaaacataattg 20187957  T
Q  268 ctacctttctctttctcacagtagcagaaacaatcatnnnnnnn--caattgcttccattctatttctcacaattgaatggtttagttctacacaattta 365  Q
    |||| ||||||||||||| ||| ||||||||||||||         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20187958 ctacgtttctctttctcatagttgcagaaacaatcatataaaaaaacaattgcttccattctatttctcacaattaaatggtttagttctacacaattta 20188057  T
Q  366 tcaaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatac 465  Q
    | |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20188058 ttaaacaattgttcagagaagggcccctcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatac 20188157  T
Q  466 ttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcac 542  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20188158 ttgatcctttcttatgatcctgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcac 20188234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 25613428 - 25613565
Alignment:
Q  238 ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca 337  Q
    ||||||||||||||||  ||| ||||| |||| ||||||||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||||    
T  25613428 ccactaatcacactcaagaaatcataactgctgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca 25613527  T
Q  338 attgaatggtttagttctacacaatttatcaaacaatt 375  Q
    |||  |||||||| ||||||||||||||| ||||||||    
T  25613528 atttcatggtttacttctacacaatttattaaacaatt 25613565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 46119661 - 46119741
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 145  Q
    |||||||||||||||||||||| |||||||||||||||||||| |        ||| ||||||||||||| ||||||||||    
T  46119661 taatctatacctattaataaaggcaatactattttttggtgtaacatttttttgtaaatcccaaaatgcccttacttgatg 46119741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 22048969 - 22048926
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagc 109  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  22048969 aatctatacctattaataaaggcaatacttttttttgttgtagc 22048926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 20187760 - 20187847
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttatt 154  Q
    |||||||||||||||||||| || ||||||| | ||||||||||       ||| ||||| ||||||| ||| |||||||| ||||||    
T  20187760 atctatacctattaataaaggcagtactattatgtggtgtagcctttttttgtaaatccccaaatgcccttatttgatggccgttatt 20187847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 17722221 - 17722357
Alignment:
Q  238 ccactaatcacactcacaaaaacataa--ttgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctca 335  Q
    ||||||||||||||||||||| |||||  |||||   || |||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||    
T  17722221 ccactaatcacactcacaaaatcataacgttgct---ttactctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctca 17722317  T
Q  336 caattgaatggtttagttctacacaatttatcaaacaatt 375  Q
    |||||| |||||||| ||||| ||||||||| ||||||||    
T  17722318 caattgcatggtttacttctatacaatttattaaacaatt 17722357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 21686161 - 21686116
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||    
T  21686161 taatctatacctattaataaaggcaatacttttttttggtgtagcc 21686116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 17721533 - 17721576
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||||||||||||| |||||    
T  17721533 atctatacctattaataaaggcaatactattttttggtttagcc 17721576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 23158117 - 23158160
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  23158117 atctatacctattaataaagacaatacttttgtttggtgtagcc 23158160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 19000466 - 19000508
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagc 109  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  19000466 atctatacctattaataaaggcaatactatattttggtgtagc 19000508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 18763100 - 18763145
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  18763100 taatctatacctattaataaagacagtacttttgtttggtgtagcc 18763145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 20879072 - 20879116
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagc 109  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||    
T  20879072 taatctatacctattaataaaggcaatatttttttttggtgtagc 20879116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 20014729 - 20014769
Alignment:
Q  70 tatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||| ||||||| || ||||||||||||    
T  20014729 tatacctattaataaaggcaatacttttgtttggtgtagcc 20014769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 44923925 - 44923846
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 145  Q
    ||||||||||||||||||||| |||||||||||||||||||||||       ||| ||||||||||||| ||| ||||||    
T  44923925 aatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttatttgatg 44923846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 23463793 - 23463750
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| | |||||||||||||    
T  23463793 atctatacctattaataaaggcaatactttgttttggtgtagcc 23463750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 25423815 - 25423770
Alignment:
Q  64 ttaatctatacctattaataaagacaatactatt-ttttggtgtag 108  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||    
T  25423815 ttaatctatacctattaataaaggcaatacttttcttttggtgtag 25423770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 24056915 - 24056879
Alignment:
Q  168 tctgttttacccactaatcacacaccaaaacataact 204  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  24056915 tctgctttacccactaatcacacatcaaaacataact 24056879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 35579496 - 35579453
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  35579496 atctatacctattaataaaggcaatactattttttggtgtagcc 35579453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 50380530 - 50380485
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||    
T  50380530 taatctatacctattaataaaggaaatacttttttttggtgtagcc 50380485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 581741 - 581785
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||    
T  581741 aatctatacctattaataaagacaatactttaatttggtgtagcc 581785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 581434 - 581478
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||| ||||||| |  ||||||||||||    
T  581434 aatctatacctattaataaaggcaatactttagtttggtgtagcc 581478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 19832214 - 19832257
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  19832214 atctatacctattaataaaggcaatacttttttttggtgtagcc 19832257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 20670658 - 20670616
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgta 107  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  20670658 taatctatacctattaataaatgcaatactattttttggtgta 20670616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 22542955 - 22543000
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||| ||||||||||||||||| ||||||| ||||||| |||||||    
T  22542955 taatatatacctattaataaaggcaatacttttttttgatgtagcc 22543000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 21116991 - 21116947
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  21116991 atctatacctattaataaaggcaatacttttgttttggtgtagcc 21116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 23196177 - 23196130
Alignment:
Q  65 taatctatacctattaataaagacaatactattt--tttggtgtagcc 110  Q
    |||||||||||||||||||||| ||||||| |||  ||||||||||||    
T  23196177 taatctatacctattaataaaggcaatactttttggtttggtgtagcc 23196130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 38931034 - 38930986
Alignment:
Q  62 agttaatctatacctattaataaagacaatactatt-ttttggtgtagc 109  Q
    |||| |||||||||||||||||||| ||||||| || ||||||||||||    
T  38931034 agtttatctatacctattaataaaggcaatacttttcttttggtgtagc 38930986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 34289 - 34331
Alignment:
Q  68 tctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  34289 tctatacctattaataaagggaatactattttttggtgtagcc 34331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 6152 - 6196
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  6152 atctatacctattaataaaggcaatacttttcttttggtgtagcc 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 79969 - 80015
Alignment:
Q  65 taatctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||    
T  79969 taatctatacctattaataaaggcaatacttttgttttggtgtagcc 80015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 4802 - 4846
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  4802 atctatacctattaataaaggcaatacttttattttggtgtagcc 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 935 - 891
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  935 atctatacctattaataaaggcaatacttttcttttggtgtagcc 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University