View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_high_15 (Length: 551)

Name: NF20539_high_15
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_high_15
NF20539_high_15
[»] chr6 (5 HSPs)
chr6 (15-336)||(31774276-31774591)
chr6 (389-534)||(31774078-31774223)
chr6 (95-150)||(26559165-26559220)
chr6 (100-153)||(2455896-2455949)
chr6 (100-140)||(3738200-3738240)
[»] chr8 (9 HSPs)
chr8 (85-140)||(44236739-44236794)
chr8 (85-139)||(7008698-7008752)
chr8 (100-146)||(1889066-1889112)
chr8 (101-151)||(5226603-5226653)
chr8 (103-153)||(24326117-24326167)
chr8 (83-153)||(30191055-30191125)
chr8 (100-153)||(1664455-1664508)
chr8 (100-153)||(1892155-1892208)
chr8 (106-139)||(6496776-6496809)
[»] chr5 (1 HSPs)
chr5 (86-140)||(25720334-25720388)
[»] chr4 (8 HSPs)
chr4 (100-157)||(7367985-7368042)
chr4 (101-146)||(51560221-51560266)
chr4 (102-153)||(8328052-8328103)
chr4 (100-146)||(29126194-29126240)
chr4 (98-140)||(46187838-46187880)
chr4 (100-145)||(3549486-3549531)
chr4 (100-153)||(3639099-3639152)
chr4 (100-145)||(50746069-50746114)
[»] chr3 (2 HSPs)
chr3 (80-153)||(30657372-30657445)
chr3 (100-140)||(25699129-25699169)
[»] chr2 (5 HSPs)
chr2 (100-157)||(14277824-14277881)
chr2 (100-153)||(35809953-35810006)
chr2 (100-145)||(28803461-28803506)
chr2 (100-153)||(36236374-36236427)
chr2 (100-152)||(42852633-42852685)
[»] chr7 (5 HSPs)
chr7 (105-145)||(28165185-28165225)
chr7 (100-137)||(1418521-1418558)
chr7 (100-153)||(24048626-24048679)
chr7 (101-138)||(24363532-24363569)
chr7 (101-153)||(21247586-21247638)
[»] chr1 (3 HSPs)
chr1 (101-153)||(25719757-25719809)
chr1 (84-153)||(32515356-32515425)
chr1 (100-153)||(46504149-46504202)
[»] scaffold0091 (1 HSPs)
scaffold0091 (101-151)||(6020-6070)
[»] scaffold0199 (1 HSPs)
scaffold0199 (100-153)||(6896-6949)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 31774591 - 31774276
Alignment:
Q  15 tatcaggcttggtgcgtagatataaatggtttgtggccttgaatggatatactctaatactatattaggggcctgtatgaattatcttatttgagtttat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  31774591 tatcaggcttggtgcgtagatataaatggtttgtggccttgaatggata----------ctatattaggggcctgtatgaattatcttatttgagtttat 31774502  T
Q  115 ctaccggcataagcacttatgagactctttggaagagctcatgnnnnnnnn----cttatgatatgttcattctcaacttattttcaaaacccttcaaga 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  31774501 ctaccggcataagcacttatgagactgtttggaagagctcatgaaaaaaaaaaaacttatgatatgttcattctcaacttattttcaaaacccttcaaga 31774402  T
Q  211 tactaatgaaacaacctataccttatctcgaaagattttaactttattttatcttgtagcttattcataatagcttatataataaacacttatcctataa 310  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31774401 tactaatgaaacaacctataccttatctcgaaagatttaaactttattttatcttgtagcttattcataatagcttatataataaacacttatcctataa 31774302  T
Q  311 gatgcacaaacaaccactcaagcaac 336  Q
    ||||||||||||||||||||||||||    
T  31774301 gatgcacaaacaaccactcaagcaac 31774276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 389 - 534
Target Start/End: Complemental strand, 31774223 - 31774078
Alignment:
Q  389 caagatagaagttgaattataccgcaaaaagaacaccaagaatccacaaccattctccaacaaacccaacagtattccactgagaaccttcaaagaaatc 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31774223 caagatagaagttgaattataccgcaaaaagaacaccaagaatccacaaccattctccaacaaacccaacagtattccactgagaaccttcaaagaaatc 31774124  T
Q  489 aggatctttgtaagtaccaggaggtctccattcaaaaggccaatct 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31774123 aggatctttgtaagtaccaggaggtctccattcaaaaggccaatct 31774078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 26559165 - 26559220
Alignment:
Q  95 attatcttatttgagtttatctaccggcataagcacttatgagactctttggaaga 150  Q
    |||| |||||||||||||| |||| |||||||||| || ||||||| |||||||||    
T  26559165 attaacttatttgagtttacctactggcataagcatttgtgagactgtttggaaga 26559220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 2455949 - 2455896
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||| ||||||||||||||||||||||  |||| | ||| ||||||||    
T  2455949 cttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagct 2455896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 3738240 - 3738200
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagact 140  Q
    |||||||||||||||||||  |||||||||||| |||||||    
T  3738240 cttatttgagtttatctactagcataagcacttgtgagact 3738200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 44236739 - 44236794
Alignment:
Q  85 gcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagact 140  Q
    |||||| || |||| ||||||||||||||||||| ||||||||||||| |||||||    
T  44236739 gcctgtttggattaccttatttgagtttatctactggcataagcacttgtgagact 44236794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 7008752 - 7008698
Alignment:
Q  85 gcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagac 139  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||||||| ||||||    
T  7008752 gcctgtttgaattgacttatttgagtttatctactggcataagcacttgtgagac 7008698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 1889066 - 1889112
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttgg 146  Q
    ||||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  1889066 cttatttgagtttatctactggcataaacacttttgagactgtttgg 1889112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 5226653 - 5226603
Alignment:
Q  101 ttatttgagtttatctaccggcataagcacttatgagactctttggaagag 151  Q
    ||||||||  ||||||||  |||||||||||||||||||| ||||||||||    
T  5226653 ttatttgatcttatctacttgcataagcacttatgagactgtttggaagag 5226603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 24326167 - 24326117
Alignment:
Q  103 atttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||| ||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagct 24326117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 30191055 - 30191125
Alignment:
Q  83 gggcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||| || || | ||||||||||||||||||  ||||||||||||| | ||||| ||||| ||||||    
T  30191055 gggcctgtttgcataagcttatttgagtttatctattggcataagcacttgttagactgtttgggagagct 30191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 1664508 - 1664455
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||||||||||||  |||||| ||||| ||||||| ||||| ||||||    
T  1664508 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagct 1664455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 1892155 - 1892208
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    ||||||||||||||||||||| ||||| ||||| ||||| | ||||| ||||||    
T  1892155 cttatttgagtttatctaccgtcataaacacttgtgagattgtttggcagagct 1892208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 6496776 - 6496809
Alignment:
Q  106 tgagtttatctaccggcataagcacttatgagac 139  Q
    ||||||||||||| ||||||||||||||||||||    
T  6496776 tgagtttatctactggcataagcacttatgagac 6496809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 25720334 - 25720388
Alignment:
Q  86 cctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagact 140  Q
    ||||| ||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  25720334 cctgtttgaattagcttatttgaggttatctactggcataagcacttgtgagact 25720388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 7367985 - 7368042
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagctcatg 157  Q
    ||||||||||||||||||| ||||||| | ||| ||||||| ||||| ||||||||||    
T  7367985 cttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatg 7368042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 51560221 - 51560266
Alignment:
Q  101 ttatttgagtttatctaccggcataagcacttatgagactctttgg 146  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||    
T  51560221 ttatatgagcttatctactggcataagcacttatgagactctttgg 51560266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 8328052 - 8328103
Alignment:
Q  102 tatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||| |||||||  ||||||||||||||||||||| ||||||| ||||    
T  8328052 tatttgagcttatctattggcataagcacttatgagactgtttggaatagct 8328103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 29126194 - 29126240
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttgg 146  Q
    |||||||||| ||||||||||||||||||||||| || ||| |||||    
T  29126194 cttatttgagcttatctaccggcataagcacttacgaaactatttgg 29126240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 46187838 - 46187880
Alignment:
Q  98 atcttatttgagtttatctaccggcataagcacttatgagact 140  Q
    |||||||||||| |||||||| ||||||| |||||||||||||    
T  46187838 atcttatttgagcttatctactggcataaacacttatgagact 46187880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 3549486 - 3549531
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttg 145  Q
    ||||||| ||||||||||  ||||||||||||||||||||| ||||    
T  3549486 cttattttagtttatctattggcataagcacttatgagactgtttg 3549531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 3639099 - 3639152
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||| |||||||||| ||||||||| | ||||| | ||||||||||||    
T  3639099 cttatttgagcttatctaccgacataagcacctgtgagattatttggaagagct 3639152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 50746114 - 50746069
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttg 145  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||||    
T  50746114 cttatttgagtttatctacttgcataagcacttgtgagactatttg 50746069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 30657445 - 30657372
Alignment:
Q  80 taggggcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||| |||| ||||||   |||||||||||||||||| | ||||||||||| ||||| | ||||||||||||    
T  30657445 taggggtctgtttgaattgatttatttgagtttatctactgacataagcacttttgagattgtttggaagagct 30657372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 25699129 - 25699169
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagact 140  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  25699129 cttatttgagtttatctattgacataagcacttatgagact 25699169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 14277824 - 14277881
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagctcatg 157  Q
    ||||||||||||||||||| | |||||| |||| ||||| | ||||||||||||||||    
T  14277824 cttatttgagtttatctacggacataagtacttgtgagagtgtttggaagagctcatg 14277881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 35810006 - 35809953
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||||| ||||||    
T  35810006 cttatttgagcttatctaccggcataagcagttgtgagactatttgggagagct 35809953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 28803461 - 28803506
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttg 145  Q
    |||||||||| |||||||||||||||||||| | ||||||| ||||    
T  28803461 cttatttgagcttatctaccggcataagcacatgtgagactgtttg 28803506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 36236374 - 36236427
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||||| ||||| | ||||||||||||| |||||| |||| |||||||    
T  36236374 cttatttgagttcatctatcagcataagcacttacgagactatttgtaagagct 36236427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 42852633 - 42852685
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagc 152  Q
    |||||||||  |||||| | ||||||||||||| ||||||| |||||||||||    
T  42852633 cttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagc 42852685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 28165225 - 28165185
Alignment:
Q  105 ttgagtttatctaccggcataagcacttatgagactctttg 145  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  28165225 ttgagcttatctaccagcataagcacttatgagactctttg 28165185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 1418558 - 1418521
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgag 137  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  1418558 cttatttgagcttatctactggcataagcacttatgag 1418521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 24048679 - 24048626
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    ||||||||||||||||||| | |||||| |||||  ||||| ||||||||||||    
T  24048679 cttatttgagtttatctactgacataagtacttaaaagactgtttggaagagct 24048626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 24363532 - 24363569
Alignment:
Q  101 ttatttgagtttatctaccggcataagcacttatgaga 138  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  24363532 ttatttgagtttatctactagcataagcacttatgaga 24363569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 21247638 - 21247586
Alignment:
Q  101 ttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    ||||||||||||||||||| |||||| ||||| ||| ||| |||| |||||||    
T  21247638 ttatttgagtttatctacctgcataaccacttgtgaaactgtttgcaagagct 21247586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 25719809 - 25719757
Alignment:
Q  101 ttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||||||| ||| ||| |||||| |||||||||||||||| ||||||    
T  25719809 ttatttgagtttatttactggcttaagcatttatgagactctttgggagagct 25719757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 32515356 - 32515425
Alignment:
Q  84 ggcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    ||||||| || |||| | |||||||||||||||||   ||||||||||| ||||||| ||||| ||||||    
T  32515356 ggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagct 32515425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 46504149 - 46504202
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||||||||||||||||||||| | || ||||||| || || ||||||    
T  46504149 cttatttgagtttatctaccggcataagtatttgtgagactgttcggtagagct 46504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 6070 - 6020
Alignment:
Q  101 ttatttgagtttatctaccggcataagcacttatgagactctttggaagag 151  Q
    ||||||||  ||||||||  |||||||||||||||||||| ||||||||||    
T  6070 ttatttgatcttatctacttgcataagcacttatgagactgtttggaagag 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 6949 - 6896
Alignment:
Q  100 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 153  Q
    |||||||||||||||||||  |||||| ||||| ||||||| ||||| ||||||    
T  6949 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagct 6896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University