View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_high_2 (Length: 753)

Name: NF20539_high_2
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_high_2
NF20539_high_2
[»] chr5 (1 HSPs)
chr5 (102-737)||(7461945-7462590)


Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 102 - 737
Target Start/End: Original strand, 7461945 - 7462590
Alignment:
Q  102 ctgtttctttcaatttgtttcctaattccgtacaataatattatcatgaagtagaaacgtgacataccctctaatcaatgtcctacatcacgtgcatgtc 201  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7461945 ctgtttctttcaatttgtttcctaattccgtacaata---ttatcatgaagtagaaacgtgacataccctctaatcaatgtcctacatcacgtgcatgtc 7462041  T
Q  202 tttttcattatcttaacctttcaataatctttgcttaaattagatcttatcatcttaactcttaattaccatatatgttaaattannnnnnngtagatgt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||||||||    
T  7462042 tttttcattatcttaacctttcaataatctttgcttaaattagatcttatcatcttaactcttaattaccatatatgttcaattatttttttgtagatgt 7462141  T
Q  302 tgaagctaagagagcagctttctgaggcagagaaggaaattcaacgccttcgagagcctaatagtagctctagtactgcatcaatttcacaatccatgga 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  7462142 tgaagctaagagagcagctttctgaggcagagaaggaaattcaacgccttcgagagcctaatagtagctctagtacttcatcaatttcacaattcatgga 7462241  T
Q  402 agtagtggatccacaatttcatgatgaatttgaagttaatcatatatata---atgatgtgtttttcacgtcggatgcgacatattacttcaatggccaa 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| | |||||||||||||||||||||||||||||    
T  7462242 agtagtggatccacaatttcatgatgaatttgaagttaatcatatatataatgatgatgtgtttttcatgccggatgcgacatattacttcaatggccaa 7462341  T
Q  499 gaatggatt---------atctaagaaactaaaacaataataatatttactaattaacttagcatttgtagataatgtgaaggatatccctcaatatgta 589  Q
    |||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7462342 gaatggattaatgtgtagatctaagaaactaaaacaataagaatatttactaattaacttagcatttgtagataatgtgaaggatatccctcaatatgta 7462441  T
Q  590 aattaattgttcatagctac-ttagtgtgtttattgtatgactatggattgtggaatatgtatccattgacataatgatttttattttgacctataaatg 688  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7462442 aattaattgttcatagctactttagtgtgtttattgtatgactatggattgtggaatatgtatccattgacataataatttttattttgacctataaatg 7462541  T
Q  689 gtagtgttttattgtcgttccattaacttagcttttgtcacctattaag 737  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7462542 gtagtgttttattgtcgttccattaacttaacttttgtcacctattaag 7462590  T

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