View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_20 (Length: 480)
Name: NF20539_high_20
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 34676755 - 34677205
Alignment:
| Q |
18 |
aataccagtttaccttagtctatcctggatgaatctgattgttcacaggttcatatctttcccctacataatctaaactatctactccttggccctaact |
117 |
Q |
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| T |
34676755 |
aataccagtttaccttagtctatcctggatgaatctgattgttcacaggttcatatctttcccctacataatctaaactatctactccttggccctaact |
34676854 |
T |
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| Q |
118 |
ttttatttgagaaaatccacaaggataattaagaggcctagttttcttgaaacctttcagtgtaataataacatgtccaatgataactcttcaactacta |
217 |
Q |
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| T |
34676855 |
ttttatttgagaaaatccacaaggataattaagaggcctagttttcttgaaacctttcagtgtaataataacatgtccaatgataactcttcaactacta |
34676954 |
T |
|
| Q |
218 |
ttgcatatatgttacttcttatcacaattgaagtcttgcatataatctttctgtctctctatttctgcaaacattgagccccaaaattttagccaagcct |
317 |
Q |
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| T |
34676955 |
ttgcatatatgttacttcttatcacaattgaagtcttgcatataatctttctgtctctctatttctgcaaacattgagccccaaaattttagccaagcct |
34677054 |
T |
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| Q |
318 |
ctaagtttgattgttgaatgtaggacatgtcattacccctggttatcctactagtgatgattctacaaaggtgtgtaagtgacataaatctctatatggt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34677055 |
ctaagtttgattgttgaatgtaggacatgtcattacccctggttatcctactagtgatgattctacaaaggtgtgtaagtgacataaatctctatatggt |
34677154 |
T |
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| Q |
418 |
ctaaaataagtcagtaggcaatggtactctatcatctgctttaatctccta |
468 |
Q |
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| T |
34677155 |
ctaaaataagtcagtaggcaatggtactctatcatctgctttaatctccta |
34677205 |
T |
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