View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_22 (Length: 443)
Name: NF20539_high_22
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 27426014 - 27425579
Alignment:
| Q |
20 |
agaactctcaaagattttacttttacatcttgaacatgccaaccaaatccgaagccaagcaacacattatcatat-----tagcaatgcttcaaccaaga |
114 |
Q |
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| T |
27426014 |
agaactctcaaagattttacttttacatcttgaacatgccaaccaaatccgaagccaagcaacacattatcatatcatattagcaatgcttcaaccaaga |
27425915 |
T |
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| Q |
115 |
ccatcactttttactgtttaactgcataatttagtgtagaaaaataatatcaaaatctgcatataatgatatagcagttgcaacattgaataaagtgttt |
214 |
Q |
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| T |
27425914 |
ccatcactttttactgtttaactgcataatttagtgtagaaaaataatatcaaaatctgcatataatgatataacagttgcaacattgaataaagtgttt |
27425815 |
T |
|
| Q |
215 |
ttactcaccttccatccacaatctagatgccaatatttcgctatata-----------ttatggttagcatttgcccttcttgaactttatcttcttctc |
303 |
Q |
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| T |
27425814 |
ttactcaccttccatccacaatctagatgccaatatttcgctatatataacagttcctttatggttagcatttgcccttcttgaactttatcttcttctc |
27425715 |
T |
|
| Q |
304 |
caaatcatgtcaccaaaagaacaattagaaacttgaataatcaccaaccattcactcattcttctctttcacgtggccaccataagcctgtcataaatac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27425714 |
caaatcatgtcaccaaaagaacaattagaaacttgaataatcaccaaccattcactcattcttctctttcacgtggccaccataagcctgtcataaatgc |
27425615 |
T |
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| Q |
404 |
gactctcctatggtgacgttctctttcttctctctc |
439 |
Q |
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| T |
27425614 |
ggctctcctatggtgacgttctctttcttctctctc |
27425579 |
T |
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