View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_23 (Length: 429)
Name: NF20539_high_23
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 13853591 - 13854011
Alignment:
| Q |
1 |
cagtacactcaaacggtgaagggtcattgaagtataaatgaaactttgaaatctcatcctccaagttctccggagaaggaaatacctagtcggcttctca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13853591 |
cagtacattcaaacggtgaagggtcattgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaatacctagtcggcttctca |
13853690 |
T |
|
| Q |
101 |
agttccaaatcaaactctccagtatcctacnnnnnnnnnntatatccacaacaccccaattggattcaattccaaaagctaaaacctttggcagtgacct |
200 |
Q |
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| T |
13853691 |
agttccaaatcaaactctccagtatcctacaaaaaatatatatatccacaacaccccaaatggattcaattccaaaagctaaaacctttggcagtgacct |
13853790 |
T |
|
| Q |
201 |
tatttgcataaagaacttaactcgacacttatagcattgacgcttatcatataagtacttatgtgtgacaaaacgtcaagtaaaatcaaactgtctttat |
300 |
Q |
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| T |
13853791 |
tgtttgcataaagaacttaactcgacacttatagcattgacgcttatcatataagtacttatgtataacaaaacgtcaagtaaaatcaaactgtctttat |
13853890 |
T |
|
| Q |
301 |
ttaagctctatgttcttttcataagctatcctgaaattggagtgttggtggagattctaaacgttctatggttcttttgcttcctaaacttaattctcgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13853891 |
ttaagctctatgttcttttcataagctatcctgaaattggagtgttggtggagattctaaacgttctatggttctgttgcttcctaaacttaattctcgt |
13853990 |
T |
|
| Q |
401 |
acttctctccatagttcttct |
421 |
Q |
| |
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| T |
13853991 |
acttctctccatagttcttct |
13854011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10220381 - 10220300
Alignment:
| Q |
1 |
cagtacactcaaacggtgaagggtcattgaagtataaatgaaactttgaaatctcatcctccaagttctccggagaaggaaa |
82 |
Q |
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|||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10220381 |
cagtacactcaaacggtggagggccattgaagtataaaggaaactttgaaatctcgtcctccaagttctccggagaaggaaa |
10220300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 10219359 - 10219280
Alignment:
| Q |
342 |
gtgttggtggagattctaaacgttctatggttcttttgcttcctaaacttaattctcgtacttctctccatagttcttct |
421 |
Q |
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| T |
10219359 |
gtgttggtgctgattctaaacgttctatgcttcttttgcttcctagacttaattctcgtacttctctccatagttcttct |
10219280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 10220275 - 10220227
Alignment:
| Q |
82 |
atacctagtcggcttctcaagttccaaatcaaactctccagtatcctac |
130 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
10220275 |
atacctagttggcttgtcaagttccaaatcaaactctccagtttcctac |
10220227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 24193491 - 24193529
Alignment:
| Q |
226 |
cacttatagcattgacgcttatcatataagtacttatgt |
264 |
Q |
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| T |
24193491 |
cacttatagcataaacgcttatcatataagtacttatgt |
24193529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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