View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_24 (Length: 427)
Name: NF20539_high_24
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 11162991 - 11162583
Alignment:
| Q |
19 |
agttagcagcagcaaactgaaaaatat----gcatcaaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaagtggt |
114 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11162991 |
agttagcagcaacaaactgaaaaatatatatgcatcaaaaacgaagttgcagcggctgattcggctgtgactcaaactagcaaacctttgggaaagtggt |
11162892 |
T |
|
| Q |
115 |
cttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttgattcaagcaacaaagacga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11162891 |
cttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttaattcaagcaacaaagacga |
11162792 |
T |
|
| Q |
215 |
agttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggt |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11162791 |
agtttccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggt |
11162692 |
T |
|
| Q |
315 |
gaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagtttcggttgtgttga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11162691 |
gaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagtttcggttgtgttgc |
11162592 |
T |
|
| Q |
415 |
tgatgtcca |
423 |
Q |
| |
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||||||||| |
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| T |
11162591 |
tgatgtcca |
11162583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 220 - 423
Target Start/End: Complemental strand, 11201561 - 11201358
Alignment:
| Q |
220 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11201561 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaaga |
11201462 |
T |
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| Q |
320 |
tgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagtttcggttgtgttgatgatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11201461 |
tgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagtttcggttgtgttgctgatg |
11201362 |
T |
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| Q |
420 |
tcca |
423 |
Q |
| |
|
|||| |
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| T |
11201361 |
tcca |
11201358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 11201554 - 11201432
Alignment:
| Q |
71 |
tgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatct |
170 |
Q |
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|||||| | |||||||||||||| |||| ||||||||||| | ||| |||||||||| |||||||| |||||| ||||| || || || ||||||||| |
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| T |
11201554 |
tgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatct |
11201455 |
T |
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| Q |
171 |
gctacaaaagagccaaagctggt |
193 |
Q |
| |
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| |||||||||||| |||||||| |
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| T |
11201454 |
gttacaaaagagcctaagctggt |
11201432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 4802856 - 4802779
Alignment:
| Q |
190 |
tggttgattcaagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagc |
267 |
Q |
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||||||||||||||||||||||||||||||| || | ||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
4802856 |
tggttgattcaagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaagc |
4802779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 4802779 - 4802699
Alignment:
| Q |
199 |
caagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgata |
279 |
Q |
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|||||||||||||||||||||| || | ||||||| ||||||||||||||| |||| ||||||||||||| ||| |||||| |
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| T |
4802779 |
caagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 4802772 - 4802699
Alignment:
| Q |
50 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgata |
123 |
Q |
| |
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|||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
4802772 |
caaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 4802840 - 4802780
Alignment:
| Q |
50 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaag |
110 |
Q |
| |
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|||| |||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |
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| T |
4802840 |
caaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaag |
4802780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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