View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_high_27 (Length: 414)
Name: NF20539_high_27
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 45125725 - 45125586
Alignment:
| Q |
1 |
ctattatccacttaactcaaaactcaaatgggaacgaaaagattgatctcctatcttggcatttgtaaatttcaatagtagctttggtgcctagctacta |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45125725 |
ctattatccacttaactcaaaagtcaaatgggaaccaaaagattgatctcctatcttggcatttgtaaatttcaatagtagctttggtgcctagctacta |
45125626 |
T |
|
| Q |
101 |
ggagtgtaannnnnnnagttattaattgaaattgggttga |
140 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |
|
|
| T |
45125625 |
ggagtgtaatttttttagttattaattgaaatttggttga |
45125586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 45125550 - 45125425
Alignment:
| Q |
222 |
ttaatcatgtgttttcatcaatgagacttaaatctaagactttattttgatgatctgagttcagttttactcaaatc-----aacgttggtattagattg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
45125550 |
ttaatcatgtgttttcatcaatgagacttaaatctaagactttactttgatgatctgagtttagttttactcaaatcaaattaacgttggtattatattg |
45125451 |
T |
|
| Q |
317 |
aaatgttggagttacaattaataaag |
342 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
45125450 |
aaatgttggagttaaaattaataaag |
45125425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 45125585 - 45125546
Alignment:
| Q |
159 |
tattcgtgtgaaatatctactagcgttgttaattattaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45125585 |
tattcgtgtgaaatatctactagcgttgttaattattaat |
45125546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 398
Target Start/End: Complemental strand, 45125398 - 45125369
Alignment:
| Q |
369 |
ggtggacctccactggcatgtgcttatagc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45125398 |
ggtggacctccactggcatgtgcttatagc |
45125369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University