View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_28 (Length: 400)
Name: NF20539_high_28
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_28 |
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| [»] scaffold0164 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0164 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 386
Target Start/End: Original strand, 3559 - 3931
Alignment:
| Q |
14 |
ttctagaaaagatgcaactgaatcattccactaacatagaaagccctagtaaattgttgaaaagggtttctaaaacaatggatatgagtttaggcatctc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3559 |
ttctagaaaagatgcaactgaatcattccactaacatagaaagccctagtaaattgttgaaaagggtttctaaaacaatggatatgagttcaggcatctc |
3658 |
T |
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| Q |
114 |
tcttgatcagaattctaaagcgaaggaaactactttcactacattggatatgcaaattgggaaaaatctatgtgtagaggacacttctctaggtaaaatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3659 |
tcttgatcagaattctaaagcgaaggaaactactttcactacattggatatgcaaattgggaaaaatctaagtgtagaggacacttctctaggtaaaatg |
3758 |
T |
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| Q |
214 |
cagttaaatcatatcactgccatagaggtatctagtaaactggtaaaaagagcctctagtcaggtggatttgagccgtgctaccttactaaatcagaatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3759 |
cagttaaatcatatcactgccatagaggtatctagtaaactggtaaaaagagcctctaatcaggtggatttgcgccgtgctaccttactaaatcagaatt |
3858 |
T |
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| Q |
314 |
ctacttttgtgacactgaggcaggatttggaaaatacttttgttgacaattccatgctgcaaagtattatttc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3859 |
ctacttttgtgacactgaggcaggatttggaaaatacttttgttgacaataccatgctgcaaagtattatttc |
3931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 67148 - 67519
Alignment:
| Q |
14 |
ttctagaaaagatgcaactgaatcattccactaacatagaaagccctagtaaattgttgaaaagggtttctaaaacaatggatatgagtttaggcatctc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
67148 |
ttctagaaaagatgcaactgaatcattccactaacatagaaagccctagtaaactgttgaaaagggtttctaaaccaatggatatgagttcaggcatctc |
67247 |
T |
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| Q |
114 |
tcttgatcagaattctaaagcgaaggaaactactttcactacattgg-atatgcaaattgggaaaaatctatgtgtagaggacacttctctaggtaaaat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
67248 |
tcttgatcagaattctaaagcgaaggaaactactttcactacattgggatatgcaaattgggaaaaatctaagtgtagaggacacttctctaggtaaaat |
67347 |
T |
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| Q |
213 |
gcagttaaatcatatcactgccatagaggtatctagtaaactggtaaaaagagcctctagtcaggtggatttgagccgtgctaccttactaaatcagaat |
312 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
67348 |
gcagttaaatcatatcactgccatagaggaatctagtaaactggtaaaaagagcctctaatcaggtggatttgagccctgctaccttactaaatcagaat |
67447 |
T |
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| Q |
313 |
tctacttttgtgacactgaggcaggatttggaaaatacttttgttgacaattccatgctgcaaagtattatt |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
67448 |
tctacttttgtgacactgaggcaggatttggaaaatacttttgttgataattccatgctgcaaagtattatt |
67519 |
T |
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