View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_37 (Length: 354)
Name: NF20539_high_37
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_37 |
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| [»] scaffold0048 (2 HSPs) |
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| [»] scaffold0185 (2 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 64709 - 64840
Alignment:
| Q |
26 |
ttttactttttcgtttagtaaaaacaagtgtttcacgttttatccatatatcacaaaagaagtttggttttagcaaaccaatatgtgggacctatccaaa |
125 |
Q |
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| T |
64709 |
ttttactttttcattaagtaaaaacaagtgtttcacgttttccccatatatcacaaaagaagttaggttttaccaaaccaatctgtgggacctattcgaa |
64808 |
T |
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| Q |
126 |
agtttccatttccaacattcattttgagccatgaaact |
163 |
Q |
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| T |
64809 |
ag------tttcgaacattcattttgagccatgaaact |
64840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 51389 - 51519
Alignment:
| Q |
26 |
ttttactttttcgtttagtaaaaacaagtgtttcacgttttatccatatatcacaaaagaagtttggttttagcaaaccaatatgtgggacctatccaaa |
125 |
Q |
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| T |
51389 |
ttttactttttcatgtagtaaaaacaagtgtttcacgttttccccatatatcacaaaagaagttaggttttaccaaaccaatctgtagtacctattcgaa |
51488 |
T |
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| Q |
126 |
agtttccatttccaacattcattttgagccatgaaac |
162 |
Q |
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| T |
51489 |
ag------tttcgaacattcattttgagccatgaaac |
51519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 4673 - 4706
Alignment:
| Q |
26 |
ttttactttttcgtttagtaaaaacaagtgtttc |
59 |
Q |
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| T |
4673 |
ttttactttttcgtttagtaaaaacaagtgtttc |
4706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 4741 - 4793
Alignment:
| Q |
134 |
tttccaacattcattttgagccatgaaactggggccca-gagaataacatttt |
185 |
Q |
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| T |
4741 |
tttcgaacattcattttgagccatgaaactagggtcgaggagaataacatttt |
4793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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