View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_39 (Length: 346)
Name: NF20539_high_39
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 26 - 346
Target Start/End: Complemental strand, 51938436 - 51938106
Alignment:
| Q |
26 |
atctgaagaatggtaatatcttaaccagggtaaacatgaagctaacgtgtactacaactcatttta----------atgcaatgatcgttgcaattgcat |
115 |
Q |
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| T |
51938436 |
atctgaacaatggtaatatcttaaccagggtaaacatgaagctaacgtgtaccacaactcataatatataaaagggaggtaatgatcgttgcaattgcat |
51938337 |
T |
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| Q |
116 |
tgtatttttgtcaactcttagcaaaactcaatggcagacaaggagacaacaaaagagaagaatggatcagatttcagaaatggaacaactattgacaacg |
215 |
Q |
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| T |
51938336 |
tgtatttttgtcaactcttagcaaaactcaatggcagacaaggagacaacaaaagagaagaatggatcagatttcagaaatggaacaactattgacaacg |
51938237 |
T |
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| Q |
216 |
ttgttgggcgtcgtgggctacccatgatccaaacccacaagaaagttatggattcttcggagatatgtcacgacgacagcagcccatcggtgcaagccca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51938236 |
ttgttgggcgtcgtgggctacccatgatccaaacccacaagaaagttatggattcttcagagatatgtcacgacgacagcagcccatcggtgaaagccca |
51938137 |
T |
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| Q |
316 |
aacaattcacgaacttcattctctacagaag |
346 |
Q |
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| T |
51938136 |
aacaattcacgaacttcattctctacagaag |
51938106 |
T |
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