View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_high_4 (Length: 710)

Name: NF20539_high_4
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_high_4
NF20539_high_4
[»] chr5 (1 HSPs)
chr5 (18-697)||(40650320-40650999)


Alignment Details
Target: chr5 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 18 - 697
Target Start/End: Original strand, 40650320 - 40650999
Alignment:
Q  18 aaaagatatcagggaaatataaaaaatgatttaacacctagaattttatgatagatatctcctagaagattgtctaattcccgtgtctttggcgtacgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40650320 aaaagatatcagggaaatataaaaaatgatttaacacctagaattttatgatagatatctcctagaagattgtctaattcccgtgtctttggcatacgat 40650419  T
Q  118 aaaagtatcttttcgtctctccatctgcatcaccaaactatatttgaaatgattactatcaaaatagaatatatcgattagaataaattacttgaacaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  40650420 aaaagtatcttttcgtctctccatctgcatcaccaaactatatttgaaatgattaccatcaaaatagaatatatcgattagaataaattacttgaataaa 40650519  T
Q  218 atgcaaacacaaacatacagtgtattcccattctataagtttttcgagagtggcttcttcaagtttttcttcaaagatgcacattaaatatcctacagaa 317  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40650520 atgcaaacaccaacatacagtgtattcccattctataagtttctcgagagtggcttcttcaagtttttcttcaaagatgcacattaaatatcctacagaa 40650619  T
Q  318 aacaaaaacaatatgcaatgataaaatctcaagtgctgtaaacagtgaccatgtaatcaagcctgcaacaatcatggtgccatgggaattacctattttc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40650620 aacaaaaacaatatgcaatgataaaatctcaagtgctgtaaacagtcaccatgtaatcaagcctgcaacaatcatggtgccatgggaattacctattttc 40650719  T
Q  418 tggacacaaatattattcagagtcagaattacctatttgctgtatataaacaatacagggaacaagcttgttcttgcatagatcagggagttgtgcaagt 517  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40650720 tgggcacaaatattattcagagtcagaattacctatttgctgtatataaacaatacagggaacaagcttgttcttgcatagatcagggagttgtgcaagt 40650819  T
Q  518 tccaacgatgaaacctgcaaaaaatgcatcacgataaatacacacagcatatttgttttaatgaattagaatttagagttttcatcaaagctacctcttc 617  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40650820 tccaacgatgaaacctgcaaaaaatgtatcacgatgaatacacacagcatatttgttttaatgaattagaatttagagttttcatcaaagctacctcttc 40650919  T
Q  618 caggaattctggcaattcctcatatatttgccttagctcatccaacttagaataatcaatttatcaaaagtccaaaagta 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40650920 caggaattctggcaattcctcatatatttgccttagctcatccaacttagaataaccaatttatcaaaagtccaaaagta 40650999  T

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